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- Calculate keynodes ranks (analysis) (5 categories)
- Select random rows (analysis) (5 categories)
- Metabolic Control Analysis (5 categories)
- GTEX Mutation effect on sites (analysis) (5 categories)
- Simulation analysis (5 categories)
- ChIPMunk (analysis) (5 categories)
- Site search on gene set (analysis) (5 categories)
- Steady State (analysis) (5 categories)
- Affymetrix normalization (analysis) (5 categories)
- Plot pie chart (analysis) (5 categories)
- Prepare GTF annotation (analysis) (5 categories)
- Construct composite modules on tracks with keynodes (analysis) (5 categories)
- Group table rows (analysis) (5 categories)
- IPS motif discovery (analysis) (5 categories)
- Illumina normalization (analysis) (5 categories)
- Join several tables (analysis) (5 categories)
- Venn diagrams (analysis) (5 categories)
- Select table columns (analysis) (5 categories)
- Motif quality analysis (5 categories)
- Site search on track (analysis) (5 categories)
- Compare TFBS mutations (analysis) (5 categories)
- Track statistics (analysis) (5 categories)
- Construct composite modules with keynodes (analysis) (5 categories)
- Convert site models to proteins (analysis) (5 categories)
- Guided linear model analysis (5 categories)
- Read counter (analysis) (5 categories)
- Diagram graph compare analysis (5 categories)
- Bowtie (analysis) (5 categories)
- CRC Analysis (5 categories)
- Select top rows (analysis) (5 categories)
- Site search report (analysis) (5 categories)
- Agilent normalization (analysis) (5 categories)
- Compute profile thresholds (analysis) (5 categories)
- Track to gene set (analysis) (5 categories)
- Convert site search summary (analysis) (5 categories)
- Create IPS model (analysis) (5 categories)
- Get miRNA targets (analysis) (5 categories)
- Create miRNA promoters (analysis) (5 categories)
- Join tracks (analysis) (5 categories)
- Functional classification (analysis) (5 categories)
- Share molecules (analysis) (5 categories)
- Site search result optimization (analysis) (5 categories)
- Stoichiometric Matrix (analysis) (5 categories)
- Algebraic steady state (analysis) (5 categories)
- Construct IPS CisModule (analysis) (5 categories)
- Transcript set to track (analysis) (5 categories)
- Continue CMA (analysis) (5 categories)
- Convert table (analysis) (5 categories)
- Apply CMA model to tracks (analysis) (5 categories)
- Create Match model (analysis) (5 categories)
- Get transcripts track (analysis) (5 categories)
- Join two tables (analysis) (5 categories)
- TreeMap on Functional classification (analysis) (5 categories)
- Filter duplicate rows (analysis) (5 categories)
- Run MACS 1.3.7 on ChiP-Seq (analysis) (5 categories)
- MSAT (analysis) (5 categories)
- SNP matching (analysis) (5 categories)
- Flux Balance Constraint (analysis) (5 categories)
- CR cluster selector (analysis) (5 categories)
- Functional classification by diagrams (analysis) (5 categories)
- Sensitivity Analysis (5 categories)
- Model analysis (5 categories)
- Change profile cutoffs (analysis) (5 categories)
- Site search summary (analysis) (5 categories)
- Cluster analysis by K-means (analysis) (5 categories)
- PSD pharmaceutical compounds analysis (5 categories)
- Composite module to proteins (analysis) (5 categories)
- Construct composite modules (analysis) (5 categories)
- Transform table (analysis) (5 categories)
- Convert table to VCF track (analysis) (5 categories)
- Create profile from CMA model (analysis) (5 categories)
- Create weight matrix model (analysis) (5 categories)
- Recalculate composite module score on new track (analysis) (5 categories)
- Linear Shifted Model (analysis) (4 categories)
- Make GTF for riboseq alignment (analysis) (4 categories)
- SNP regions in genome (analysis) (4 categories)
- BuildASiteOffsetTable (analysis) (4 categories)
- Matrix comparison (analysis) (4 categories)
- Search regulated genes (analysis) (4 categories)
- GC island finder (analysis) (4 categories)
- Sign test (analysis) (4 categories)
- Site distribution (analysis) (4 categories)
- Check Workflow consistency (analysis) (4 categories)
- Sites Motifs Analysis (4 categories)
- Normalization quality plots (analysis) (4 categories)
- Classification analysis (4 categories)
- Sort SQL track (analysis) (4 categories)
- Open tracks for all TF (analysis) (4 categories)
- Cluster by path (analysis) (4 categories)
- Stub process file (analysis) (4 categories)
- Summary on AUCs (analysis) (4 categories)
- Peak finders comparison (analysis) (4 categories)
- ComputeProfileSums (analysis) (4 categories)
- Add genes from CMA (analysis) (4 categories)
- TrackInfo table creation (analysis) (4 categories)
- PredictStartSites (analysis) (4 categories)
- Transcriptome mappability (analysis) (4 categories)
- Convert diagram to pairs (analysis) (4 categories)
- Transform track to table (analysis) (4 categories)
- Count reads in transcripts (analysis) (4 categories)
- Binding regions summary (analysis) (4 categories)
- Create database from diagram (analysis) (4 categories)
- GlycanR (analysis) (4 categories)
- Quality control analysis (4 categories)
- Identification of composite elements by filters (analysis) (4 categories)
- Recon transformer (analysis) (4 categories)
- Differential expression with DESeq (analysis) (4 categories)
- Import ensembl homology (analysis) (4 categories)
- EBarrays (analysis) (4 categories)
- Install TRANSFAC(R) database (analysis) (4 categories)
- Join GTRD Tracks (analysis) (4 categories)
- Extract ribosomal RNA (analysis) (4 categories)
- Upload from FTP (analysis) (4 categories)
- Validate Experiments (analysis) (4 categories)
- Locations of best sites (analysis) (4 categories)
- Run a Workflow as Analysis (4 categories)
- Make meta tracks (analysis) (4 categories)
- SNPs in binding regions (analysis) (4 categories)
- Mass Conservation Analysis (4 categories)
- BuildProfileModel (analysis) (4 categories)
- Matrix derivation (analysis) (4 categories)
- Fold-Change calculation (analysis) (4 categories)
- Select files from folder (analysis) (4 categories)
- Merge track statistics (analysis) (4 categories)
- GLBSOLVE (analysis) (4 categories)
- Sequence mappability (analysis) (4 categories)
- MicroRNA aligner (analysis) (4 categories)
- Simulate Population (analysis) (4 categories)
- Sites Open Chromatin Statistics (analysis) (4 categories)
- Classification analysis advanced (analysis) (4 categories)
- Cluster by shortest path (analysis) (4 categories)
- Parameter identifiability (optimization) (analysis) (4 categories)
- Common and IPS scores correlation (analysis) (4 categories)
- ComputeTranscriptProfile (analysis) (4 categories)
- Add reactants (analysis) (4 categories)
- Prediction of TF-binding sites of given TF (analysis) (4 categories)
- Transcriptome minimal unique length (analysis) (4 categories)
- Convert files to tracks (analysis) (4 categories)
- ArticleComparator (analysis) (4 categories)
- CoverageCheker (analysis) (4 categories)
- Create flat files (analysis) (4 categories)
- Create profile from matrix library (analysis) (4 categories)
- Quality control metrics (analysis) (4 categories)
- Heterozygous site caller (analysis) (4 categories)
- IPS-scores in SNPs (analysis) (4 categories)
- Reduce CMA results (analysis) (4 categories)
- Illumina metylation probes to track (analysis) (4 categories)
- Remove unobservable molecules (analysis) (4 categories)
- Import from BC Platform (analysis) (4 categories)
- Ribo-Seq and mRNA features forming (analysis) (4 categories)
- Install TRANSPATH(R) database (analysis) (4 categories)
- Join GTRD clusters (analysis) (4 categories)
- Fantom analysis (4 categories)
- Variance filter (analysis) (4 categories)
- Run analysis (4 categories)
- Map Transfac sites to genome (analysis) (4 categories)
- Find shortest path between two sets (analysis) (4 categories)
- Calculate TFs regulatory score (analysis) (4 categories)
- Meta analysis (4 categories)
- Sequence minimal unique length (analysis) (4 categories)
- MicroRNA finder (analysis) (4 categories)
- Sites Open Chromatin Statistics For Folders (analysis) (4 categories)
- Normalize Affymetrix experiment and control (analysis) (4 categories)
- Split fasta (analysis) (4 categories)
- Parameter identifiability (table) (analysis) (4 categories)
- Perfectosape (analysis) (4 categories)
- Compute coverage by window (analysis) (4 categories)
- Table imputation (analysis) (4 categories)
- Track correlation (analysis) (4 categories)
- Analysis of Binding Regions (analysis) (4 categories)
- Convert genomic BAM to transcriptomic (analysis) (4 categories)
- Convert tracks to VCF (analysis) (4 categories)
- ArticleTrackCreator (analysis) (4 categories)
- Coverage Profiles Cutoff (analysis) (4 categories)
- RNA-Seq analysis (4 categories)
- IPS ROC-curves (analysis) (4 categories)
- Reactions Analysis (4 categories)
- Reduce track (analysis) (4 categories)
- Distinct TF classes (analysis) (4 categories)
- Effector search (analysis) (4 categories)
- RiboSeqExp (analysis) (4 categories)
- Join diagrams (analysis) (4 categories)
- Export element (analysis) (4 categories)
- Fast table filter (analysis) (4 categories)
- Univariate sample analysis (4 categories)
- Filtering experiments by cell types (analysis) (4 categories)
- Map to Transpath (analysis) (4 categories)
- SVM (analysis) (4 categories)
- Find target genes (analysis) (4 categories)
- CMA Result Statistic (analysis) (4 categories)
- Mutations to genes with weights (analysis) (4 categories)
- ChromatinInfo table creation (analysis) (4 categories)
- Sites genome location (analysis) (4 categories)
- Normalize Agilent experiment and control (analysis) (4 categories)
- Generate Table From JSON (analysis) (4 categories)
- Clean up SQL database (analysis) (4 categories)
- Outer join (analysis) (4 categories)
- Colon cancer signature2 (analysis) (4 categories)
- Compare Experiments (analysis) (4 categories)
- TF binding sites prediction in genome or track (analysis) (4 categories)
- AUC Estimation For meta-cluster track (analysis) (4 categories)
- Compute coverage profile (analysis) (4 categories)
- Track coverage (analysis) (4 categories)
- Analysis of Cis-Regulatory Modules (analysis) (4 categories)
- Treatment Simulation (analysis) (4 categories)
- Copy data element (analysis) (4 categories)
- Creasemarks analysis (4 categories)
- Create matrix by mixture of normal components (analysis) (4 categories)
- Create random track (analysis) (4 categories)
- ROC-curves in clusterized peaks (analysis) (4 categories)
- Infer network (analysis) (4 categories)
- RiboseqArticleResult (analysis) (4 categories)
- Intersect tables (analysis) (4 categories)
- Export master track (analysis) (4 categories)
- LS-regression analysis (4 categories)
- Univariate samples analysis (4 categories)
- Visualize results (analysis) (4 categories)
- Filtration of predicted sites by filters (analysis) (4 categories)
- Mappability histogram (analysis) (4 categories)
- Blast alignment coverage (analysis) (4 categories)
- Sample population (analysis) (4 categories)
- Find unmappable regions (analysis) (4 categories)
- Search binding sites (analysis) (4 categories)
- Merge binding regions for cell-lines (analysis) (4 categories)
- Calculate weighted mutation score (analysis) (4 categories)
- Mixture of normal components (analysis) (4 categories)
- Chromosome enrichment (analysis) (4 categories)
- Sites genome location for folders (analysis) (4 categories)
- Normalize Illumina experiment and control (analysis) (4 categories)
- Generate dynamic model (analysis) (4 categories)
- Colon cancer signature (analysis) (4 categories)
- Particle swarm optimization (analysis) (4 categories)
- Plot scatter chart (analysis) (4 categories)
- Prepare Search by regulation (analysis) (4 categories)
- Copy folder (analysis) (4 categories)
- BAM filter multi-hits (analysis) (4 categories)
- Profiles Statistics (analysis) (4 categories)
- Create DAS track (analysis) (4 categories)
- Genome coverage (analysis) (4 categories)
- Create matrix logo (analysis) (4 categories)
- Create state (analysis) (4 categories)
- ROC-curves in grouped peaks (analysis) (4 categories)
- IPS prediction (analysis) (4 categories)
- Data matrix operations (analysis) (4 categories)
- Regression analysis (4 categories)
- Report generator for quality control analysis (4 categories)
- Encode quality metrics estimation (analysis) (4 categories)
- Intersect tracks (analysis) (4 categories)
- Join table (analysis) (4 categories)
- Export metadata json (analysis) (4 categories)
- Large sequence minimal unique length (analysis) (4 categories)
- Verify Condition for Table (analysis) (4 categories)
- MEALR (tracks) (analysis) (4 categories)
- Save hits (analysis) (4 categories)
- FinderArticlePoints (analysis) (4 categories)
- Search for enriched TFBSs (genes) (analysis) (4 categories)
- Merge peak callers (analysis) (4 categories)
- Set initial values from simulation result (analysis) (4 categories)
- ChIP-Seq characteristics distribution (analysis) (4 categories)
- Site Profile Filtering (analysis) (4 categories)
- Gene features (analysis) (4 categories)
- Cis-module identification (analysis) (4 categories)
- Oligonucleotides in sequence samples (analysis) (4 categories)
- Generate workflow from annotation diagram (analysis) (4 categories)
- Stem loop predictor (analysis) (4 categories)
- PASS analysis (4 categories)
- Color space to nucleotide (analysis) (4 categories)
- Compare analysis results (analysis) (4 categories)
- Adaptive simulated annealing (analysis) (4 categories)
- Prepare cluster to exp table (analysis) (4 categories)
- Analyze miRNA target enrichment (analysis) (4 categories)
- Correlation Analysis (4 categories)
- BAM filter strand specific (analysis) (4 categories)
- Create tissue-specific promoter track (analysis) (4 categories)
- ROC-curves in overlapped ChIP-Seq peaks (analysis) (4 categories)
- Diagram to user hub collection (analysis) (4 categories)
- Regression analysis advanced (analysis) (4 categories)
- Double encode SOLiD (analysis) (4 categories)
- Install ExPASy (analysis) (4 categories)
- Enhance Score (analysis) (4 categories)
- Export per cell clusters (analysis) (4 categories)
- Up and Down Identification (analysis) (4 categories)
- Limma (analysis) (4 categories)
- Save network (analysis) (4 categories)
- CRISPR Cas9 and specific oligonucleotides (analysis) (4 categories)
- Search for enriched TFBSs (tracks) (analysis) (4 categories)
- Merge peaks (analysis) (4 categories)
- SelectionTrustClusters (analysis) (4 categories)
- GTRD analysis (4 categories)
- Cellular genetic algorithm (analysis) (4 categories)
- Gathering genome statistics (analysis) (4 categories)
- ChIP-Seq peaks clusterization (analysis) (4 categories)
- Site Size Filtering (analysis) (4 categories)
- Multivariate regression analysis (4 categories)
- Gene overlap statistics (analysis) (4 categories)
- Change diagram (analysis) (4 categories)
- Non-merged ChIP-Seq tracks summary (analysis) (4 categories)
- Cis-module sets near given genes (analysis) (4 categories)
- Open per TF view (analysis) (4 categories)
- Cluster analysis (4 categories)
- PCA (analysis) (4 categories)
- Compare site models (analysis) (4 categories)
- Add calculated column (analysis) (4 categories)
- Polynomial Regression analysis (4 categories)
- Prepare finished tables (analysis) (4 categories)
- Correlations of best sites (analysis) (4 categories)
- Create per TF flat files (analysis) (4 categories)
- Create transcript region track (analysis) (4 categories)
- DNase-seq Group and Profile Generation (Previous version) (analysis) (4 categories)
- ROC curves for best sites union (analysis) (4 categories)
- Identical best site ROC-curves (analysis) (4 categories)
- Rebuild search indexes (analysis) (4 categories)
- Regulator search (analysis) (4 categories)
- Download model (analysis) (4 categories)
- Install HumanPSD(TM) database (analysis) (4 categories)
- Isoform TE (analysis) (4 categories)
- Estimate read density (analysis) (4 categories)
- Extend network (analysis) (4 categories)
- Update master track (analysis) (4 categories)
- LincRNA and mRNA features (analysis) (4 categories)
- SDE model (analysis) (4 categories)
- Find longest connected chains (analysis) (4 categories)
- Find miRNA feed forward loops with CMA (analysis) (4 categories)
- Merge simulation results (analysis) (4 categories)
- GTRD analysis advanced (analysis) (4 categories)
- ChIP-seq Quality control analysis (4 categories)
- Site counts in repeats (analysis) (4 categories)
- Multivariate sample analysis (4 categories)
- Nonlinear Model (analysis) (4 categories)
- Cistrom construction (analysis) (4 categories)
- Open regulated genes table (analysis) (4 categories)
- Add expression values (analysis) (4 categories)
- Pharmaceutical Compounds analysis (4 categories)
- Population generation (analysis) (4 categories)
- Transcript structure analysis (4 categories)
- Prepare target genes by expression (analysis) (4 categories)
- Convert diagram to Transpath (analysis) (4 categories)
- Apply events (analysis) (4 categories)
- Count olig frequencies (analysis) (4 categories)
- Create custom project (analysis) (4 categories)
- Quadratic Hill-climbing (analysis) (4 categories)
- Heatmap (analysis) (4 categories)
- Quantile normalization (analysis) (4 categories)
- Hypergeometric analysis (4 categories)
- DNase-seq Group and Profile Generation (analysis) (4 categories)
- Identification of cis-regulatory modules with given pattern of TF-classes (analysis) (4 categories)
- Remote application client (analysis) (4 categories)
- Import HOCOMOCO (analysis) (4 categories)
- Install Reactome (analysis) (4 categories)
- Evolution strategy (SRES) (analysis) (4 categories)
- Extract RNA length (analysis) (4 categories)
- Two multivariate sample analysis (4 categories)
- Update pubmed (analysis) (4 categories)
- Biouml.plugins.sabiork (plugin) (3 categories)
- Find common effectors for multiple gene sets (TRANSPATH(R)) (workflow) (3 categories)
- Biouml.plugins.simulation (plugin) (3 categories)
- SDF file (3 categories)
- Mapping to ontologies (TRANSPATH(R)) (workflow) (3 categories)
- Find master regulators for multiple gene sets (GeneWays) (workflow) (3 categories)
- Biouml.plugins.users (plugin) (3 categories)
- Mapping to ontology - select a classification (Multiple Gene tables) (workflow) (3 categories)
- Focused upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (3 categories)
- ChIP-Seq - Identify TF binding sites on peaks for multiple datasets (TRANSFAC(R)) (workflow) (3 categories)
- Gene set enrichment analysis (Agilent probes) (workflow) (3 categories)
- Com.developmentontheedge.util (plugin) (3 categories)
- Compute differentially expressed genes using EBarrays (workflow) (3 categories)
- Analyze any DNA sequence, GeneBank (workflow) (3 categories)
- Biouml.plugins.agentmodeling (plugin) (3 categories)
- Hypergeometric analysis for multiple inputs (workflow) (3 categories)
- Biouml.plugins.ccsignature (plugin) (3 categories)
- Biouml.plugins.das (plugin) (3 categories)
- Identify enriched motifs in tracks (TRANSFAC(R)) (workflow) (3 categories)
- Biouml.plugins.fbc (plugin) (3 categories)
- Biouml.plugins.go (plugin) (3 categories)
- Biouml.plugins.keynodes (plugin) (3 categories)
- Ru.biosoft.bsa.server (plugin) (3 categories)
- Explain my genes (workflow) (3 categories)
- Biouml.plugins.mirprom (plugin) (3 categories)
- Ru.biosoft.math (plugin) (3 categories)
- Biouml.plugins.pharm (plugin) (3 categories)
- Ru.biosoft.services (plugin) (3 categories)
- Biouml.plugins.proteinmodel (plugin) (3 categories)
- Ru.biosoft.table (plugin) (3 categories)
- Biouml.plugins.sbgn (plugin) (3 categories)
- Find common effectors in networks (GeneWays) (workflow) (3 categories)
- Biouml.plugins.softberry (plugin) (3 categories)
- Mapping to ontologies and comparison for two gene sets (HumanPSD(TM)) (workflow) (3 categories)
- Find master regulators for multiple gene sets (TRANSPATH(R)) (workflow) (3 categories)
- Biouml.plugins.wiki (plugin) (3 categories)
- ChIP-Seq - Identify and classify target genes (HumanPSD(TM)) (workflow) (3 categories)
- Gene set enrichment analysis (Gene table) (workflow) (3 categories)
- Peaks to matrices (workflow) (3 categories)
- Compute differentially expressed genes using Hypergeometric test (Affymetrix probes) (workflow) (3 categories)
- Analyze any DNA sequence (GTRD) (workflow) (3 categories)
- Cross-species identification of enriched motifs in promoters, using orthologue information (TRANSFAC(R)) (workflow) (3 categories)
- Biouml.plugins.agilent (plugin) (3 categories)
- Biouml.plugins.cellml (plugin) (3 categories)
- Identify composite modules in promoters (TRANSFAC(R)) (workflow) (3 categories)
- Biouml.plugins.download (plugin) (3 categories)
- Biouml.plugins.genemodels (plugin) (3 categories)
- Biouml.plugins.googledrive (plugin) (3 categories)
- Biouml.plugins.lucene (plugin) (3 categories)
- Ru.biosoft.bsa (plugin) (3 categories)
- Biouml.plugins.modelreduction (plugin) (3 categories)
- Ru.biosoft.plugins.graph (plugin) (3 categories)
- Upstream analysis (TRANSFAC(R) and GeneWays) (workflow) (3 categories)
- Biouml.plugins.psimi (plugin) (3 categories)
- Ru.biosoft.templates (plugin) (3 categories)
- Biouml.plugins.sbml (plugin) (3 categories)
- Find common effectors in networks (TRANSPATH(R)) (workflow) (3 categories)
- Biouml.plugins.stochastic (plugin) (3 categories)
- Mapping to ontologies and comparison for two gene sets (TRANSPATH(R)) (workflow) (3 categories)
- Find master regulators in mutated network (TRANSPATH(R)) (workflow) (3 categories)
- Biouml.workbench.graph (plugin) (3 categories)
- SRA to FASTQ (workflow) (3 categories)
- ChIP-Seq - Identify and classify target genes (TRANSPATH(R)) (workflow) (3 categories)
- Gene set enrichment analysis (Illumina probes) (workflow) (3 categories)
- Compute differentially expressed genes using Hypergeometric test (Agilent probes) (workflow) (3 categories)
- Prediction of miRNA binding sites (workflow) (3 categories)
- Analyze any DNA sequence (TRANSFAC(R)) (workflow) (3 categories)
- Quantification of RNA-seq in BAM format for mouse mm9 single end (workflow) (3 categories)
- Cross-species mapping to ontologies, using orthologue information (HumanPSD(TM)) (workflow) (3 categories)
- Biouml.plugins.antimony (plugin) (3 categories)
- Biouml.plugins.chebi (plugin) (3 categories)
- Identify enriched composite modules in promoters (GTRD) (workflow) (3 categories)
- Biouml.plugins.dropbox (plugin) (3 categories)
- Biouml.plugins.genenet (plugin) (3 categories)
- Biouml.plugins.graphml (plugin) (3 categories)
- Biouml.plugins.machinelearning (plugin) (3 categories)
- Ru.biosoft.exception (plugin) (3 categories)
- Biouml.plugins.node (plugin) (3 categories)
- Ru.biosoft.plugins.javascript (plugin) (3 categories)
- Upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (3 categories)
- Biouml.plugins.reactome.biohub (plugin) (3 categories)
- Ru.biosoft.treetable (plugin) (3 categories)
- Biouml.plugins.sbw (plugin) (3 categories)
- Find enriched TF binding sites in variation sites (TRANSFAC(R)) (workflow) (3 categories)
- Biouml.plugins.svg (plugin) (3 categories)
- Mapping to ontologies for multiple gene sets (HumanPSD(TM)) (workflow) (3 categories)
- Find master regulators in mutated network (workflow) (3 categories)
- Biouml.workbench (plugin) (3 categories)
- ChIP-Seq - Identify and classify target genes (workflow) (3 categories)
- Gene set enrichment analysis - select a classification (Gene table) (workflow) (3 categories)
- Compute differentially expressed genes using Hypergeometric test (Illumina probes) (workflow) (3 categories)
- Analyze any DNA sequence for site enrichment (GTRD) (workflow) (3 categories)
- Convert identifiers for multiple gene sets (workflow) (3 categories)
- Quantification of RNA-seq in FASTQ format for mouse mm9 single end (workflow) (3 categories)
- Biouml.plugins.bindingregions (plugin) (3 categories)
- Biouml.plugins.chemoinformatics (plugin) (3 categories)
- Identify enriched composite modules in promoters (TRANSFAC(R)) (workflow) (3 categories)
- Biouml.plugins.endonet (plugin) (3 categories)
- Biouml.plugins.geneways (plugin) (3 categories)
- Biouml.plugins.gtrd (plugin) (3 categories)
- Biouml.plugins.matlab (plugin) (3 categories)
- Ru.biosoft.fs (plugin) (3 categories)
- Biouml.plugins.obo (plugin) (3 categories)
- Ru.biosoft.plugins.jri (plugin) (3 categories)
- Upstream analysis with feedback loop (TRANSFAC(R) and TRANSPATH(R)) (workflow) (3 categories)
- Biouml.plugins.reactome (plugin) (3 categories)
- Ru.biosoft.vm (plugin) (3 categories)
- Biouml.plugins.sedml (plugin) (3 categories)
- Find gene fusions from RNA-seq (workflow) (3 categories)
- Biouml.plugins.test (plugin) (3 categories)
- Mapping to ontologies for multiple gene sets (TRANSPATH(R)) (workflow) (3 categories)
- Find master regulators in networks (GeneWays) (workflow) (3 categories)
- ChIP-Seq - Identify composite modules on peaks (TRANSFAC(R)) (workflow) (3 categories)
- Gene set enrichment analysis HumanPSD (Affymetrix probes) (workflow) (3 categories)
- Compute differentially expressed genes (Affymetrix probes) (workflow) (3 categories)
- Compute differentially expressed genes using Limma (workflow) (3 categories)
- Analyze SNP list (GTRD) (workflow) (3 categories)
- Analyze any DNA sequence for site enrichment (TRANSFAC(R)) (workflow) (3 categories)
- Quantification of RNA-seq with Cufflinks (no de-novo assembly) for FASTQ files (workflow) (3 categories)
- Biouml.plugins.bionetgen (plugin) (3 categories)
- Biouml.plugins.chipmunk (plugin) (3 categories)
- Identify enriched motifs in promoters (GTRD) (workflow) (3 categories)
- Biouml.plugins.enrichment (plugin) (3 categories)
- Biouml.plugins.genomeenhancer (plugin) (3 categories)
- Biouml.plugins.gxl (plugin) (3 categories)
- Ru.biosoft.access.search (plugin) (3 categories)
- Biouml.plugins.metabolics (plugin) (3 categories)
- Ru.biosoft.galaxy (plugin) (3 categories)
- Biouml.plugins.optimization (plugin) (3 categories)
- Ru.biosoft.proteome (plugin) (3 categories)
- Biouml.plugins.research (plugin) (3 categories)
- Ru.biosoft.workbench (plugin) (3 categories)
- Find 10 master regulators in networks (TRANSPATH(R)) (workflow) (3 categories)
- Biouml.plugins.seek (plugin) (3 categories)
- Mapping to GO ontologies and comparison for two gene sets (workflow) (3 categories)
- Find genome variants and indels from RNA-seq (workflow) (3 categories)
- Biouml.plugins.transfac (plugin) (3 categories)
- Mapping to ontologies for multiple gene sets (workflow) (3 categories)
- Find master regulators in networks (TRANSPATH(R)) (workflow) (3 categories)
- Gene set enrichment analysis HumanPSD (Agilent probes) (workflow) (3 categories)
- Compute differentially expressed genes (Agilent Tox probes) (workflow) (3 categories)
- Analyze SNP list (TRANSFAC(R)) (workflow) (3 categories)
- Quantification of RNA-seq with Cufflinks (with de-novo assembly) for FASTQ files (workflow) (3 categories)
- Biouml.plugins.biopax (plugin) (3 categories)
- Biouml.plugins.cma (plugin) (3 categories)
- Reads to matrices (workflow) (3 categories)
- Identify enriched motifs in promoters (TRANSFAC(R)) (workflow) (3 categories)
