Transcriptome minimal unique length (analysis)
From BioUML platform
- Analysis title
Transcriptome minimal unique length
- Provider
- Institute of Systems Biology
- Class
TranscriptomeMinimalUniqueLength- Plugin
- biouml.plugins.riboseq (RiboSeq Experiment)
Description
For each position in transcript find the shortest possible read length that can map uniquely to this position.
Parameters:
- Transcript set – Transcript set
- Annotation source – Source of gene annotation
- Transcripts annotation track – Track with transcripts annotation in BED format
- Genome sequence – Collection of chromosomal sequences
- Ensembl – Ensembl database version
- Transcript subset – Subset of transcripts used in this analysis
- GTF file – GTF file
- Only protein coding – Use only protein coding transcripts
- Result path – Path to store result
