IPS motif discovery (analysis)
From BioUML platform
- Analysis title
IPS motif discovery
- Provider
- Institute of Systems Biology
- Class
IPSMotifDiscoveryAnalysis- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Discover motifs in the sequence set.
Parameters:
- Input Sequences – Input Sequences
- Initial matrices – Frequecy matrices that will be used as initial approximation
- Search for sub motifs – Whether to search for sub motifs
- Max iterations – Maximum number of iterations
- Min number of sequences – Minimal number of sequences to make a matrix
- Window size – Size of window around binding site for calculation of local background
- Critical IPS threshold – Critical IPS threshold
- Output matrix collection – Collection where constructed matrices will be saved
