Effector search (analysis)

Find genes or proteins regulated by the input set of genes.

Molecules collection – Input the collection of molecules/genes
Weighting column (expert) – Column to replace weights in search graph
Limit input size (expert) – Limit size of input list
Input size (expert) – Size of input list
Max radius – Maximal search radius
Score cutoff – Molecules with Score lower than specified will be excluded from the result
Search collection – Collection containing reactions
Custom search collection – Path to the custom search collection
Relation sign – Consider only specified type of relation chain between molecules.
Species – Species to which analysis should be confined
Calculate FDR – If true, analysis will calculate False Discovery Rate
FDR cutoff – Molecules with FDR higher than specified will be excluded from the result
Z-score cutoff – Molecules with Z-score lower than specified will be excluded from the result
Penalty (expert) – Penalty value for false positives
Decorators – Decorators
Normalize multi-forms (expert) – Normalize weights of multiple forms
Output name – Output name.