SNP regions in genome (analysis)

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Analysis title
Default-analysis-icon.png SNP regions in genome
Provider
Institute of Systems Biology
Class
SNPRegionsInGenome
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

This analysis finds SNP regions in genome

Parameters:

  • Sequences collection – Select a source of nucleotide sequences
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • SNP track – Track containing SNPs (sites must have 'AltAllele' and 'RefAllele' properties)
  • SNP region length – Length of each reference region
  • Output table path – Path to the output table
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