Transform track to table (analysis)
From BioUML platform
- Analysis title
- Transform track to table
- Provider
- Institute of Systems Biology
- Class
TransformTrackToTable
- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Create data matrix with sequence sample and/or values of variables that are dynamic properties of sites in track
Parameters:
- Input track – Select input track (it can be ChIP-seq track from GTRD; thus, it can be the result of MACS or SISSRs peak-finder)
- Table content – Select table content
- Variable names – Select variable names
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Sequence sample type – Select sequence sample type
- Specified length of sequence – Specify sequence length
- Output table path – Path to the output table