Create matrix by mixture of normal components (analysis)
From BioUML platform
- Analysis title
- Create matrix by mixture of normal components
- Provider
- Institute of Systems Biology
- Class
CreateMatrixByMixture
- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Calculation of matrix by using mixture of normal components for maximal IPS scores
Parameters:
- Input track – Select input track (it has to contain the merged binding regions; it can be the result of 'Merge binding regions for cell-lines' analysis)
- TF class – TF class in Wingender classification (like '2.1.1.1.4')
- Minimal region length – Minimal length of sequence region
- P-value threshold – P-value threshold
- Maximal number of iterations – Maximal number of iterations in algorithm
- Number of matrices – How many matrices will be constructed
- Initial matrix as consensus – Check this if you want to specify an initial matrix as consensus
- Consensus – Specify the consensus
- Matrix path – Specify the path to the initial matrix
- Output matrix library – Matrix library to store the resulting matrices (will be created if not exists)
- Matrix name prefix – All matrices will be created with given name prefix