Transcriptome mappability (analysis)
From BioUML platform
- Analysis title
Transcriptome mappability
- Provider
- Institute of Systems Biology
- Class
TranscriptomeMappability- Plugin
- biouml.plugins.riboseq (RiboSeq Experiment)
Description
Compute transcriptome mappability.
Parameters:
- Minimal unique length – Minimal unique length file, produced by 'Transcriptome minimal unique length' analysis
- Read length distribution – Table with ids corresponding to read length and 'Count' column
- Transcript subset – Use only transcripts present in this table
- Mappability profile – Resulting mappability profile
- Transcript mappable length – Number of mappable positions for each transcript
- CDS mappable length – Number of mappable position in coding sequence
- Min CDS overlap – Min CDS overlap
- Transcript set – Transcript set
- Annotation source – Source of gene annotation
- Transcripts annotation track – Track with transcripts annotation in BED format
- Genome sequence – Collection of chromosomal sequences
- Ensembl – Ensembl database version
- Transcript subset – Subset of transcripts used in this analysis
- GTF file – GTF file
