Quality control metrics (analysis)

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Analysis title
Default-analysis-icon.png Quality control metrics
Provider
Institute of Systems Biology
Class
QualityControlMetrics
Plugin
biouml.plugins.gtrd (GTRD)

Description

Calculation of quality control metrics for assessing tracks from GTRD.

Parameters:

  • Species – Select a taxonomical species
  • Path to folder with folders – Path to folder with folders (Each internal folder contains ChIP-seq tracks with peaks)
  • Folders names – Select folders names
  • Type of combined peaks – Type of combined peaks
  • Minimal length of peaks – All peaks that are shorter than this threshold will be prolongated
  • Maximal length of peaks – All peaks that are longer than this threshold will be truncated
  • FPCM threshold – FPCM threshold
  • Do add auxiliary information – Do add auxiliary information (such as number of observed peaks without orphans)?
  • Path to output folder – Path to output folder
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