ChIP-Seq peaks clusterization (analysis)

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Analysis title
Default-analysis-icon.png ChIP-Seq peaks clusterization
Provider
Institute of Systems Biology
Class
ChIPSeqPeaksClusterization
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

clusterization of ChIP-Seq peaks ont the basis of peaks characteristics

Parameters:

  • Input track – Select input track (it can be ChIP-seq track from GTRD; thus, it can be the result of MACS or SISSRs peak-finder)
  • Type of data transformation – Type of data transformation
  • Number of clusters – Number of clusters
  • Do add numbers of overlaps – Do add numbers of overlaps to the set of peak characteristics?
  • Path to output folder – Output folder will be created under this location when it doesn't exist
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