Sites genome location for folders (analysis)

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Analysis title
Default-analysis-icon.png Sites genome location for folders
Provider
Institute of Systems Biology
Class
SiteGenomeLocationForFolders
Plugin
biouml.plugins.gtrd (GTRD)

Description

Count TSS and/or repeats for experiments

Parameters:

  • organism – choose organism, for wich you will analyze tracks
  • path to input folder – path to folder with experiments
  • Change sites size – change miniml size of the sites
  • write sites size – write miniml size of the sites
  • Count repeats in track – Count repeats in track
  • Count TSS in track – Count TSS in track
  • Upstream – Choose - N nucleotides from TSS
  • Downstream – Choose + N nucleotides from TSS
  • number of threads – number of threads
  • output name – write name of putput file
  • Record result to GTRD database – Record result to GTRD database
  • write new table – record new table to GTRD database
  • write data to existed table – record data to existed table in GTRD database
  • nameOfExistedTable – nameOfExistedTable
  • path to output folder – path to output folder
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