Import HOCOMOCO (analysis)

From BioUML platform
Jump to: navigation, search
Analysis title
Default-analysis-icon.png Import HOCOMOCO
Provider
Institute of Systems Biology
Class
ImportHocomoco
Plugin
biouml.plugins.gtrd (GTRD)

Description

Imports HOCOMOCO database from flat files.

Parameters:

  • PCM flat file – Position count matrix flat file
  • PWM flat file – Position weight matrix flat file
  • Thresholds table – Table with model thresholds
  • Thresholds folder – Thresholds folder
  • Uniprot matching table – Table witih ID corresponding to uniprot name and first columnt corresponding to uniprot id
  • Resulting matrix collection – Path to resulting matrix collection
  • Resulitng site model collection – Path to resulting site model collection
  • Resulting factor collection – Resulting factor collection
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox