BuildASiteOffsetTable (analysis)
From BioUML platform
- Analysis title
BuildASiteOffsetTable
- Provider
- Institute of Systems Biology
- Class
BuildASiteOffsetTable- Plugin
- biouml.plugins.riboseq (RiboSeq Experiment)
Description
Build A site offset table on the length of the fragment.
Parameters:
- BAM files – BAM files with genomic alignments
- Transcript set – Transcript set
- Annotation source – Source of gene annotation
- Transcripts annotation track – Track with transcripts annotation in BED format
- Genome sequence – Collection of chromosomal sequences
- Ensembl – Ensembl database version
- Transcript subset – Subset of transcripts used in this analysis
- GTF file – GTF file
- Transcript overhangs – Transcript overhangs
- Strand specific – In strand specific protocol reads can come only from positive strand of transcript
- A site offset Table – table: length - offset
