SNP matching (analysis)
From BioUML platform
- Analysis title
SNP matching
- Provider
- Institute of Systems Biology
- Class
SNPListToTrack- Plugin
- biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)
Description
Converts given list of SNPs to track and matches them to the genes. User should supply table where row identifiers are SNP names like 'rs11111111'.
Parameters:
- Table – Table of source genes
- Ensembl – Ensembl database version
- 5' region size – Include 5' region (promoter) of given size in bp
- 3' region size – Include 3' region of given size in bp
- Output non-matched – Whether to include in output table and track SNP's which were not matched to any gene
- Column to copy – Name of additional column to be copied to created genes table
- Ignore empty values – Ignore empty values during aggregator work
- Aggregator – Operation to perform on column values if several SNP's matched to single gene ('minimum','maximum','sum','average')
- Output track – Path to output track
- Output SNP table – Path to output table with additional annotation
- Output genes table – Path to output table containing all the genes matched to SNPs
