Find miRNA feed forward loops with CMA (analysis)

Analysis title

Find miRNA feed forward loops with CMA

Provider

geneXplain GmbH

Class

FFLoopCMA

Plugin

biouml.plugins.cma (Composite module analyst)

Description

Find miRNA feed forward loops with CMA.

Parameters:

• miRNA CMA Summary – CMA Summary on miRNA sites
• Targets CMA Summary – CMA Summary on miRNA target genes
• miRNA Table – Table with miRBase miRNA symbols
• miRNA TF Sites – Site search result on miRNA promoters
• miRNA Promoters – miRNA promoters regions
• miRNA Scores Table – Table with TargetScan miRNA Scores
• Result Table – Output: Feed forward loops and scores
• Run with test data (expert) – Use test data