Common and IPS scores correlation (analysis)
From BioUML platform
- Analysis title
Common and IPS scores correlation
- Provider
- Institute of Systems Biology
- Class
CommonAndIPSCorrelation- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Correlation between common score and IPS-score for best IPS-sites in single Chip-Seq track
Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Input track – Select input track (it can be ChIP-seq track from GTRD; thus, it can be the result of MACS or SISSRs peak-finder)
- Minimal region length – Minimal length of sequence region
- Matrix – Path to frequency matrix
- Path to output folder – Output folder will be created under this location when it doesn't exist
