Non-merged ChIP-Seq tracks summary (analysis)
From BioUML platform
- Analysis title
Non-merged ChIP-Seq tracks summary
- Provider
- Institute of Systems Biology
- Class
NonmergedChIPSeqSummary- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Summary of non-merged ChIP-Seq tracks (creation of tables: 'summaryOfTracks', 'summaryOfCellLines', 'summaryOfTfClasses', 'countsOfTfClassesInCellLines')
Parameters:
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Species – Select a taxonomical species
- Cell line synonyms table – Cell line synonyms table (must contain the 'newNameOfCellLine' column)
- TF names table – TF names table (TF class as a row name and TF title in 'tfName' column)
- Path to output folder – Output folder will be created under this location when it doesn't exist
