Identification of cis-regulatory modules with given pattern of TF-classes (analysis)
From BioUML platform
- Analysis title
Identification of cis-regulatory modules with given pattern of TF-classes
- Provider
- Institute of Systems Biology
- Class
CisModuleWithGivenPatternIdentification- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Identification of cis-regulatory modules with given pattern of TF-classes
Parameters:
- Input track – Select input track (it has to contain the merged binding regions; it can be the result of 'Merge binding regions for cell-lines' analysis)
- Maximal number of missing TF-classes – Maximal number of TF-classes that can be absent in cis-regulatory modules
- Pattern of cis-regulatory module – Select TF-classes
- Path to table with genes – Path to table with genes
- Path to output folder – Output folder will be created under this location when it doesn't exist
