Stem loop predictor (analysis)
From BioUML platform
- Analysis title
Stem loop predictor
- Provider
- Institute of Systems Biology
- Class
StemLoopPredictor- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Predictds microRNA stem loops.
Parameters:
- inputTrack – inputTrack
- Properties for track import – Properties for track import
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- match – match
- mismatch – mismatch
- gap – gap
- scoreThreshold – scoreThreshold
- outputTable – outputTable
