Stem loop predictor (analysis)

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Analysis title
Default-analysis-icon.png Stem loop predictor
Provider
Institute of Systems Biology
Class
StemLoopPredictor
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Predictds microRNA stem loops.

Parameters:

  • inputTrack – inputTrack
  • Properties for track import – Properties for track import
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • match – match
  • mismatch – mismatch
  • gap – gap
  • scoreThreshold – scoreThreshold
  • outputTable – outputTable
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