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- (hist) Plot2D (analysis) [555 bytes]
- (hist) Sort SQL track (analysis) [555 bytes]
- (hist) Identify composite modules in promoters (TRANSFAC(R)) (workflow) [556 bytes]
- (hist) Servers [556 bytes]
- (hist) Color space to nucleotide (analysis) [559 bytes]
- (hist) Probes - Affymetrix HG-U133+ PM [559 bytes]
- (hist) Probes - Affymetrix miRNA-3-0 [559 bytes]
- (hist) Probes - Affymetrix miRNA-2-0 [559 bytes]
- (hist) Probes - Affymetrix miRNA-1-0 [559 bytes]
- (hist) Report (analysis) [562 bytes]
- (hist) Probes - Affymetrix HTA-2-0 [565 bytes]
- (hist) Stub process file (analysis) [565 bytes]
- (hist) Sbml (host object) [569 bytes]
- (hist) Create flat files (analysis) [570 bytes]
- (hist) Run analysis [573 bytes]
- (hist) Element type [577 bytes]
- (hist) RiboseqArticleResult (analysis) [581 bytes]
- (hist) Biouml.plugins.expasy (plugin) [583 bytes]
- (hist) Recon transformer (analysis) [585 bytes]
- (hist) Check quotas (analysis) [589 bytes]
- (hist) Peaks to matrices (workflow) [593 bytes]
- (hist) Search for self-regulating transcription factors (TRANSFAC(R) and TRANSPATH(R)) (workflow) [596 bytes]
- (hist) Cross-species mapping to ontologies, using orthologue information (HumanPSD(TM)) (workflow) [600 bytes]
- (hist) Node (host object) [601 bytes]
- (hist) BAM filter multi-hits (analysis) [601 bytes]
- (hist) Viewpart [604 bytes]
- (hist) Copy folder (analysis) [605 bytes]
- (hist) TRANSFAC profile (file format) [605 bytes]
- (hist) Join GTRD Tracks (analysis) [605 bytes]
- (hist) Split fasta (analysis) [608 bytes]
- (hist) Site Size Filtering (analysis) [613 bytes]
- (hist) Compare Experiments (analysis) [614 bytes]
- (hist) Import ensembl homology (analysis) [614 bytes]
- (hist) SBGN-ML (file format) [615 bytes]
- (hist) Fastx clip [616 bytes]
- (hist) Coverage Profiles Cutoff (analysis) [617 bytes]
- (hist) Systems biology - basic model editing [618 bytes]
- (hist) Biouml.plugins.reactome (plugin) [620 bytes]
- (hist) Substances - KEGG [620 bytes]
- (hist) Model analysis [621 bytes]
- (hist) Export metadata json (analysis) [621 bytes]
- (hist) Share molecules (analysis) [622 bytes]
- (hist) Document pane [626 bytes]
- (hist) Track correlation (analysis) [626 bytes]
- (hist) Rebuild search indexes (analysis) [627 bytes]
- (hist) Merge simulation results (analysis) [627 bytes]
- (hist) Double encode SOLiD (analysis) [629 bytes]
- (hist) Blast alignment coverage (analysis) [630 bytes]
- (hist) Prepare Search by regulation (analysis) [632 bytes]
- (hist) Site Profile Filtering (analysis) [635 bytes]
- (hist) Orthogonal layout [636 bytes]
- (hist) Virtual physiological human [636 bytes]
- (hist) Biouml.plugins.chebi (plugin) [637 bytes]
- (hist) Check Workflow consistency (analysis) [640 bytes]
- (hist) Select files from folder (analysis) [642 bytes]
- (hist) Map to Transpath (analysis) [644 bytes]
- (hist) Cross-species identification of enriched motifs in promoters, using orthologue information (TRANSFAC(R)) (workflow) [646 bytes]
- (hist) GC island finder (analysis) [648 bytes]
- (hist) Prepare cluster to exp table (analysis) [658 bytes]
- (hist) Install HumanPSD(TM) database (analysis) [659 bytes]
- (hist) Join tracks (analysis) [662 bytes]
- (hist) Group table rows (analysis) [664 bytes]
- (hist) Set initial values from simulation result (analysis) [666 bytes]
- (hist) CMA Result Statistic (analysis) [671 bytes]
- (hist) Install TRANSPATH(R) database (analysis) [675 bytes]
- (hist) ChIP-Seq - Identify TF binding sites on peaks (TRANSFAC(R)) (workflow) [675 bytes]
- (hist) Ru.biosoft.workbench (plugin) [675 bytes]
- (hist) Illumina metylation probes to track (analysis) [679 bytes]
- (hist) Biouml.plugins.bkl (plugin) [682 bytes]
- (hist) Select random rows (analysis) [682 bytes]
- (hist) Proteins - Reactome [684 bytes]
- (hist) Select table columns (analysis) [685 bytes]
- (hist) Colon cancer signature2 (analysis) [686 bytes]
- (hist) ChIP-Seq - Identify and classify target genes (HumanPSD(TM)) (workflow) [689 bytes]
- (hist) DataFilter (host object) [690 bytes]
- (hist) Merge peak callers (analysis) [690 bytes]
- (hist) Image (element type) [691 bytes]
- (hist) Biouml.plugins.endonet (plugin) [692 bytes]
- (hist) Substances - CAS [693 bytes]
- (hist) Export master track (analysis) [695 bytes]
- (hist) Transform table (analysis) [696 bytes]
- (hist) Ru.biosoft.table (plugin) [698 bytes]
- (hist) Query system (extension point) [698 bytes]
- (hist) Enhance Score (analysis) [702 bytes]
- (hist) Script viewpart [703 bytes]
- (hist) Simulate Population (analysis) [704 bytes]
- (hist) Table imputation (analysis) [705 bytes]
- (hist) Install Reactome (analysis) [706 bytes]
- (hist) Biouml.plugins.sbml (plugin) [707 bytes]
- (hist) ChIP-Seq - Identify and classify target genes (TRANSPATH(R)) (workflow) [708 bytes]
- (hist) Identify enriched motifs in tracks (TRANSFAC(R)) (workflow) [709 bytes]
- (hist) Genome coverage (analysis) [712 bytes]
- (hist) ChIP-Seq - Identify TF binding sites on peaks for multiple datasets (TRANSFAC(R)) (workflow) [712 bytes]
- (hist) Long-term model of the CVS/Renal system [716 bytes]
- (hist) Biouml.plugins.transfac (plugin) [716 bytes]
- (hist) Get miRNA targets (analysis) [716 bytes]
- (hist) Reads to matrices (workflow) [717 bytes]
- (hist) Proteins - GenBank [722 bytes]
- (hist) Profile (element type) [724 bytes]
- (hist) Export element (analysis) [725 bytes]
- (hist) Ru.biosoft.plugins.javascript (plugin) [726 bytes]
- (hist) BioCloudCentral [727 bytes]
- (hist) SEEK Synchronize (analysis) [727 bytes]
- (hist) Substances - ChEBI [730 bytes]
- (hist) SVM (analysis) [730 bytes]
- (hist) Biouml.plugins.fbc (plugin) [731 bytes]
- (hist) Solver (extension point) [731 bytes]
- (hist) Make meta tracks (analysis) [732 bytes]
- (hist) Sign test (analysis) [733 bytes]
- (hist) Mappability histogram (analysis) [735 bytes]
- (hist) Open regulated genes table (analysis) [735 bytes]
- (hist) Sequence minimal unique length (analysis) [737 bytes]
- (hist) Merge track statistics (analysis) [738 bytes]
- (hist) Apply state to diagram (analysis) [738 bytes]
- (hist) Run a Workflow as Analysis [738 bytes]
- (hist) Hemodynamics model (file format) [740 bytes]
- (hist) Fast table filter (analysis) [741 bytes]
- (hist) Super annotate table (analysis) [746 bytes]
- (hist) Flux Balance Analysis (workflow) [747 bytes]
- (hist) ArticleTrackCreator (analysis) [750 bytes]
- (hist) Tree-table document [752 bytes]
- (hist) Open tracks for all TF (analysis) [753 bytes]
- (hist) Create profile from CMA model (analysis) [754 bytes]
- (hist) DNase-seq Group and Profile Generation (analysis) [756 bytes]
- (hist) Annotate diagram (analysis) [757 bytes]
- (hist) Genes - GenBank [759 bytes]
- (hist) Bioumlsim [760 bytes]
- (hist) Site distribution (analysis) [762 bytes]
- (hist) Convert table via homology (analysis) [762 bytes]
- (hist) DNase-seq Group and Profile Generation (Previous version) (analysis) [762 bytes]
- (hist) Biouml.plugins.illumina (plugin) [768 bytes]
- (hist) SelectionTrustClusters (analysis) [771 bytes]
- (hist) Join GTRD clusters (analysis) [774 bytes]
- (hist) Acknowledgements [775 bytes]
- (hist) BioUML format [776 bytes]
- (hist) Diagram to user hub collection (analysis) [778 bytes]
- (hist) ChIP-Seq - Identify composite modules on peaks (TRANSFAC(R)) (workflow) [779 bytes]
- (hist) RiboSeqExp (analysis) [780 bytes]
- (hist) Map Transfac sites to genome (analysis) [781 bytes]
- (hist) Compute coverage profile (analysis) [781 bytes]
- (hist) CoverageCheker (analysis) [782 bytes]
- (hist) Convert diagram to pairs (analysis) [785 bytes]
- (hist) Create custom project (analysis) [787 bytes]
- (hist) Apply CMA model to tracks (analysis) [790 bytes]
- (hist) Calculate TFs regulatory score (analysis) [790 bytes]
- (hist) Proteins - RefSeq [795 bytes]
- (hist) Large sequence minimal unique length (analysis) [795 bytes]
- (hist) Create miRNA promoters (analysis) [795 bytes]
- (hist) Project [796 bytes]
- (hist) Verify Condition for Table (analysis) [799 bytes]
- (hist) SED-ML file [800 bytes]
- (hist) Read counter (analysis) [801 bytes]
- (hist) Plot pie chart (analysis) [801 bytes]
- (hist) Hierarchical layout [804 bytes]
- (hist) Remove unobservable molecules (analysis) [804 bytes]
- (hist) Get transcripts track (analysis) [804 bytes]
- (hist) Identify enriched motifs in tissue specific promoters (TRANSFAC(R)) (workflow) [804 bytes]
- (hist) Construct IPS CisModule (analysis) [805 bytes]
- (hist) Heterozygous site caller (analysis) [805 bytes]
- (hist) Convert tracks to VCF (analysis) [806 bytes]
- (hist) Probes - Affymetrix ST [807 bytes]
- (hist) Identify enriched motifs in tissue specific tracks (TRANSFAC(R)) (workflow) [807 bytes]
- (hist) Create IPS model (analysis) [808 bytes]
- (hist) Repository pane toolbar [810 bytes]
- (hist) Gene features (analysis) [811 bytes]
- (hist) Transcripts - RefSeq [813 bytes]
- (hist) Two multivariate sample analysis [813 bytes]
- (hist) Plot scatter chart (analysis) [815 bytes]
- (hist) Generate dynamic model (analysis) [816 bytes]
- (hist) Gene overlap statistics (analysis) [817 bytes]
- (hist) Merge peaks (analysis) [817 bytes]
- (hist) CR cluster selector (analysis) [818 bytes]
- (hist) Compute profile thresholds (analysis) [819 bytes]
- (hist) Site search summary (analysis) [820 bytes]
- (hist) Extend network (analysis) [820 bytes]
- (hist) Genes - Ensembl [820 bytes]
- (hist) Proteins - IPI [824 bytes]
- (hist) Substances - DrugBank [825 bytes]
- (hist) Biouml.plugins.chipmunk (plugin) [826 bytes]
- (hist) Extract RNA length (analysis) [826 bytes]
- (hist) Change profile cutoffs (analysis) [827 bytes]
- (hist) Filter duplicate rows (analysis) [829 bytes]
- (hist) FinderArticlePoints (analysis) [829 bytes]
- (hist) Genes - Entrez [835 bytes]
- (hist) Proteins - Ensembl [838 bytes]
- (hist) Reactions Analysis [839 bytes]
- (hist) Find target genes (analysis) [839 bytes]
- (hist) ArticleComparator (analysis) [841 bytes]
- (hist) Site search on track (analysis) [843 bytes]
- (hist) Probes - Affymetrix [843 bytes]
- (hist) Systems biology - model layout [843 bytes]
- (hist) ChIP-seq peak profile (analysis) [846 bytes]
- (hist) Variance filter (analysis) [847 bytes]
- (hist) Find unmappable regions (analysis) [848 bytes]
- (hist) Galaxy cloud [850 bytes]
- (hist) Upload from FTP (analysis) [851 bytes]
- (hist) Grid layout [855 bytes]
- (hist) Transcripts - Ensembl [856 bytes]
- (hist) SDE model (analysis) [857 bytes]
- (hist) Normalize (host object) [857 bytes]
- (hist) Differential expression with DESeq (analysis) [857 bytes]
- (hist) Merge table columns (analysis) [859 bytes]
- (hist) Join diagrams (analysis) [866 bytes]
- (hist) Biouml.plugins.sedml (plugin) [866 bytes]
- (hist) Prepare GTF annotation (analysis) [866 bytes]
- (hist) Create profile from gene table (analysis) [867 bytes]
- (hist) Simulation analysis [870 bytes]
- (hist) Motif quality analysis [874 bytes]
- (hist) ChIP-Seq characteristics distribution (analysis) [874 bytes]
- (hist) Chipmunk (host object) [876 bytes]
- (hist) Proteins - UniProt [879 bytes]
- (hist) Convert diagram to Transpath (analysis) [881 bytes]
- (hist) Transcript structure analysis [882 bytes]
- (hist) ZIP-archive (file format) [887 bytes]
- (hist) 1-dimensional arterial tree model [888 bytes]
- (hist) LS-regression analysis [888 bytes]
- (hist) Application log (viewpart) [890 bytes]
- (hist) Diff manager (extension point) [890 bytes]
- (hist) Extract ribosomal RNA (analysis) [891 bytes]
- (hist) Cis-module identification (analysis) [894 bytes]
- (hist) Biouml.plugins.optimization (plugin) [896 bytes]
- (hist) Creasemarks analysis [897 bytes]
- (hist) Analyses (extension point) [897 bytes]
- (hist) Import from TranSMART (analysis) [900 bytes]
- (hist) Site search report (analysis) [901 bytes]
- (hist) Import from BC Platform (analysis) [903 bytes]
- (hist) Biouml.plugins.enrichment (plugin) [905 bytes]
- (hist) Count olig frequencies (analysis) [906 bytes]
- (hist) Perfectosape (analysis) [906 bytes]
- (hist) Match genes and metabolites (analysis) [910 bytes]
- (hist) SISSRs output (file format) [913 bytes]
- (hist) Biohub (host object) [923 bytes]
- (hist) Clean up SQL database (analysis) [923 bytes]
- (hist) Create weight matrix model (analysis) [938 bytes]
- (hist) Multivariate sample analysis [938 bytes]
- (hist) Disease - MeSH [939 bytes]
- (hist) Create profile from site model table (analysis) [939 bytes]
- (hist) Reduce track (analysis) [942 bytes]
- (hist) Create Match model (analysis) [946 bytes]
- (hist) Annotate track with genes (analysis) [950 bytes]
- (hist) Gene set to track (analysis) [950 bytes]
- (hist) Service (extension point) [951 bytes]
- (hist) Virtual collection (extension point) [952 bytes]
- (hist) Oligonucleotides in sequence samples (analysis) [952 bytes]
- (hist) Compare site models (analysis) [953 bytes]
- (hist) Short term model of the heart output regulation [962 bytes]
- (hist) Systems biology - Get started [962 bytes]
- (hist) Save network (analysis) [971 bytes]
- (hist) Transcript set to track (analysis) [974 bytes]
- (hist) Find miRNA feed forward loops with CMA (analysis) [976 bytes]
- (hist) Data collection listener (extension point) [978 bytes]
- (hist) CNVnator genotype output (file format) [982 bytes]
- (hist) Matrix (element type) [984 bytes]
- (hist) Preprocessor (extension point) [989 bytes]
- (hist) Euler [990 bytes]
- (hist) Type driver (extension point) [996 bytes]
- (hist) Rbiouml [996 bytes]
- (hist) GO installation [997 bytes]
- (hist) Mutation effect (analysis) [998 bytes]
- (hist) Join several tables (analysis) [998 bytes]
- (hist) RAGOUT [1,000 bytes]
- (hist) Filtering experiments by cell types (analysis) [1,001 bytes]
- (hist) SAM or BAM alignment file [1,002 bytes]
- (hist) Biouml.plugins.ccsignature (plugin) [1,014 bytes]
- (hist) Ru.biosoft.analysis.optimization (plugin) [1,016 bytes]
- (hist) Stem loop predictor (analysis) [1,017 bytes]
- (hist) Plot bar chart (analysis) [1,021 bytes]
- (hist) Split VCF by regulation (analysis) [1,023 bytes]
- (hist) Import HOCOMOCO (analysis) [1,026 bytes]
- (hist) Search regulated genes (analysis) [1,029 bytes]
- (hist) Summary on AUCs (analysis) [1,030 bytes]
- (hist) BAM filter strand specific (analysis) [1,030 bytes]
- (hist) Track to gene set (analysis) [1,032 bytes]
- (hist) Enrichment (host object) [1,033 bytes]
- (hist) Peak finders comparison (analysis) [1,034 bytes]
- (hist) Quantile normalization (analysis) [1,046 bytes]
- (hist) GeneXplain GmbH [1,048 bytes]
- (hist) Visualize results (analysis) [1,049 bytes]
- (hist) Sites Open Chromatin Statistics For Folders (analysis) [1,049 bytes]
- (hist) Chromosome enrichment (analysis) [1,052 bytes]
- (hist) Common class (extension point) [1,054 bytes]
- (hist) ChIP-Seq peaks clusterization (analysis) [1,054 bytes]
- (hist) Convert identifiers for multiple gene sets (workflow) [1,054 bytes]
- (hist) Sequence mappability (analysis) [1,057 bytes]
- (hist) Save hits (analysis) [1,063 bytes]
- (hist) Folder (element type) [1,065 bytes]
- (hist) GWAS format [1,066 bytes]
- (hist) Analysis of Cis-Regulatory Modules (analysis) [1,067 bytes]
- (hist) LincRNA and mRNA features (analysis) [1,073 bytes]
- (hist) IPS motif discovery (analysis) [1,078 bytes]
- (hist) Search binding sites (analysis) [1,081 bytes]
- (hist) Binding regions summary (analysis) [1,082 bytes]
- (hist) TreeMap on Functional classification (analysis) [1,083 bytes]
- (hist) Repository actions provider (extension point) [1,086 bytes]
- (hist) SNPs in binding regions (analysis) [1,091 bytes]
- (hist) File (element type) [1,094 bytes]
- (hist) Mapping to ontologies (Gene table) (workflow) [1,097 bytes]
- (hist) Cluster track (analysis) [1,099 bytes]
- (hist) BioHub [1,112 bytes]
- (hist) Expression mapping [1,114 bytes]
- (hist) Sequence (element type) [1,115 bytes]
- (hist) Система кровообращения человека [1,115 bytes]
- (hist) Transcriptome minimal unique length (analysis) [1,116 bytes]
- (hist) Diagram (element type) [1,120 bytes]
- (hist) Reduce CMA results (analysis) [1,122 bytes]
- (hist) Convert files to tracks (analysis) [1,131 bytes]
- (hist) Recalculate composite module score on new track (analysis) [1,131 bytes]
- (hist) GlycanR (analysis) [1,133 bytes]
- (hist) Cluster analysis [1,134 bytes]
- (hist) Create profile from matrix library (analysis) [1,134 bytes]
- (hist) Univariate sample analysis [1,138 bytes]
- (hist) Create DAS track (analysis) [1,141 bytes]
- (hist) Make GTF for riboseq alignment (analysis) [1,146 bytes]
- (hist) Combined track [1,147 bytes]
- (hist) Context item (extension point) [1,151 bytes]
- (hist) Outer join (analysis) [1,156 bytes]
- (hist) Track coverage (analysis) [1,157 bytes]
- (hist) Univariate samples analysis [1,160 bytes]
- (hist) General control panel [1,164 bytes]
- (hist) Cell type specific TFBS prediction [1,164 bytes]
- (hist) IPS-scores in SNPs (analysis) [1,173 bytes]
- (hist) Sites Open Chromatin Statistics (analysis) [1,173 bytes]
- (hist) Convert genomic BAM to transcriptomic (analysis) [1,174 bytes]
- (hist) Nonlinear Model (analysis) [1,175 bytes]
- (hist) Create database from diagram (analysis) [1,177 bytes]
- (hist) Select top rows (analysis) [1,178 bytes]
- (hist) SRA to FASTQ (workflow) [1,181 bytes]
- (hist) PASS analysis [1,184 bytes]
- (hist) Multivariate regression analysis [1,189 bytes]
- (hist) Analysis (element type) [1,190 bytes]
- (hist) SNP regions in genome (analysis) [1,191 bytes]
- (hist) Intersect tables (analysis) [1,192 bytes]
- (hist) Cluster by path (analysis) [1,193 bytes]
- (hist) Create matrix logo (analysis) [1,199 bytes]
- (hist) Identification of cis-regulatory modules with given pattern of TF-classes (analysis) [1,200 bytes]
- (hist) BuildASiteOffsetTable (analysis) [1,200 bytes]
- (hist) Quality control metrics (analysis) [1,202 bytes]
- (hist) Filter track by condition (analysis) [1,204 bytes]
- (hist) Colon cancer signature (analysis) [1,208 bytes]
- (hist) BioUML server [1,214 bytes]
- (hist) Compute coverage by window (analysis) [1,214 bytes]
- (hist) Illumina normalization (analysis) [1,215 bytes]
- (hist) Update master track (analysis) [1,215 bytes]
- (hist) Normalization quality plots (analysis) [1,222 bytes]
- (hist) MicroRNA finder (analysis) [1,225 bytes]
- (hist) Interval format [1,231 bytes]
- (hist) Systems biology - model export [1,235 bytes]
- (hist) Algebraic steady state (analysis) [1,241 bytes]
- (hist) BioUML workbench [1,244 bytes]
- (hist) AUC Estimation For meta-cluster track (analysis) [1,244 bytes]
- (hist) SimulationEngine (host object) [1,246 bytes]
- (hist) Find common effectors in networks (GeneWays) (workflow) [1,248 bytes]
- (hist) IPS prediction (analysis) [1,250 bytes]
- (hist) Explain my genes (workflow) [1,252 bytes]
- (hist) Site model (element type) [1,256 bytes]
- (hist) Data matrix operations (analysis) [1,260 bytes]
- (hist) Lucene indexes creation [1,264 bytes]
- (hist) Linear Shifted Model (analysis) [1,268 bytes]
- (hist) Biouml.plugins.modelreduction (plugin) [1,270 bytes]
- (hist) Add genes from CMA (analysis) [1,272 bytes]
- (hist) Wizard page (extension point) [1,275 bytes]
- (hist) Add reactants (analysis) [1,276 bytes]
- (hist) Analyze any DNA sequence, Fasta (workflow) [1,276 bytes]
- (hist) Reference type [1,279 bytes]
- (hist) Distinct TF classes (analysis) [1,279 bytes]
- (hist) Analyze any DNA sequence, EMBL (workflow) [1,283 bytes]
- (hist) Add calculated column (analysis) [1,283 bytes]
- (hist) Site search result optimization (analysis) [1,290 bytes]
- (hist) Count reads in transcripts (analysis) [1,290 bytes]
- (hist) Analyze any DNA sequence, GeneBank (workflow) [1,291 bytes]
- (hist) Gathering genome statistics (analysis) [1,294 bytes]
- (hist) CRISPR Cas9 and specific oligonucleotides (analysis) [1,296 bytes]
- (hist) Create tissue-specific promoter track (analysis) [1,296 bytes]
- (hist) Convert table to track (analysis) [1,307 bytes]
- (hist) Filtration of predicted sites by filters (analysis) [1,307 bytes]
- (hist) PSD pharmaceutical compounds analysis [1,308 bytes]
- (hist) Gene set enrichment analysis (Gene table) (workflow) [1,311 bytes]
- (hist) Compare analysis results (analysis) [1,318 bytes]
- (hist) Optimization (host object) [1,319 bytes]
- (hist) Matrix comparison (analysis) [1,319 bytes]
- (hist) Non-merged ChIP-Seq tracks summary (analysis) [1,320 bytes]
- (hist) Template (extension point) [1,323 bytes]
- (hist) About dialog (extension point) [1,326 bytes]
- (hist) Building Flux Balance DataTable (analysis) [1,328 bytes]
- (hist) Gene set enrichment analysis HumanPSD (Gene table) (workflow) [1,330 bytes]
- (hist) Filter one track by another (analysis) [1,331 bytes]
- (hist) Isoform TE (analysis) [1,334 bytes]
- (hist) Cluster by shortest path (analysis) [1,340 bytes]
- (hist) Adaptive simulated annealing (analysis) [1,341 bytes]
- (hist) Find master regulators in networks (TRANSPATH(R)) (workflow) [1,343 bytes]
- (hist) Common and IPS scores correlation (analysis) [1,344 bytes]
- (hist) Parameter identifiability (optimization) (analysis) [1,345 bytes]
- (hist) Diagram graph compare analysis [1,347 bytes]
- (hist) ComputeProfileSums (analysis) [1,350 bytes]
- (hist) Jupyter [1,359 bytes]
- (hist) Identification of composite elements by filters (analysis) [1,365 bytes]
- (hist) Mapping to ontologies for multiple gene sets (workflow) [1,366 bytes]
- (hist) BioUML - systems biology [1,381 bytes]
- (hist) Sites genome location for folders (analysis) [1,385 bytes]
- (hist) MicroRNA aligner (analysis) [1,387 bytes]
- (hist) Fold-Change calculation (analysis) [1,388 bytes]
- (hist) Systems biology - model import [1,388 bytes]
- (hist) Find master regulators in networks (GeneWays) (workflow) [1,390 bytes]
- (hist) Transform track to table (analysis) [1,397 bytes]
- (hist) Gene set enrichment analysis - select a classification (Gene table) (workflow) [1,405 bytes]
- (hist) Gene Ontology [1,405 bytes]
- (hist) Biouml.plugins.transpath (plugin) [1,417 bytes]
- (hist) Profiles Statistics (analysis) [1,417 bytes]
- (hist) Tests [1,424 bytes]
- (hist) Classification analysis [1,425 bytes]
- (hist) Estimate read density (analysis) [1,425 bytes]
- (hist) Convert table to VCF track (analysis) [1,429 bytes]
- (hist) Visible plugin (extension point) [1,431 bytes]
- (hist) Cross cost grid layout [1,432 bytes]
- (hist) Prediction of miRNA binding sites (workflow) [1,435 bytes]
- (hist) Locations of best sites (analysis) [1,442 bytes]
- (hist) Layout (extension point) [1,451 bytes]
- (hist) Find common effectors in networks (TRANSPATH(R)) (workflow) [1,458 bytes]
- (hist) Process track with sites (analysis) [1,465 bytes]
- (hist) IPS ROC-curves (analysis) [1,467 bytes]
- (hist) GTRD analysis advanced (analysis) [1,468 bytes]
- (hist) Compare TFBS mutations (analysis) [1,471 bytes]
- (hist) Biouml.plugins.affymetrix (plugin) [1,474 bytes]
- (hist) Correlations of best sites (analysis) [1,476 bytes]
- (hist) Annotation (extension point) [1,487 bytes]
- (hist) Perspective [1,487 bytes]
- (hist) Look and feel (extension point) [1,500 bytes]
- (hist) Cis-module sets near given genes (analysis) [1,503 bytes]
- (hist) Functional classification by diagrams (analysis) [1,512 bytes]
- (hist) Search tools [1,514 bytes]
- (hist) Find 10 master regulators in networks (TRANSPATH(R)) (workflow) [1,520 bytes]
- (hist) ComputeTranscriptProfile (analysis) [1,523 bytes]
- (hist) Mutations to genes with weights (analysis) [1,525 bytes]
- (hist) CloudBioLinux [1,528 bytes]
- (hist) DiChIPMunk (analysis) [1,530 bytes]
- (hist) ROC-curves in grouped peaks (analysis) [1,532 bytes]
- (hist) Biouml.plugins.cma (plugin) [1,533 bytes]
- (hist) Script type (extension point) [1,534 bytes]
- (hist) Transcriptome mappability (analysis) [1,544 bytes]
- (hist) ChIPMunk (analysis) [1,549 bytes]
- (hist) Identical best site ROC-curves (analysis) [1,549 bytes]
- (hist) Geneways [1,551 bytes]
- (hist) Module type (extension point) [1,562 bytes]
- (hist) Tutorials [1,567 bytes]
- (hist) QUAST [1,569 bytes]
- (hist) Intersect tracks (analysis) [1,569 bytes]
- (hist) Venn diagrams (analysis) [1,571 bytes]
- (hist) Find 3 master regulators in networks with context genes (TRANSPATH(R)) (workflow) [1,571 bytes]
- (hist) Merge binding regions for cell-lines (analysis) [1,572 bytes]
- (hist) TF binding sites prediction in genome or track (analysis) [1,572 bytes]
- (hist) Gene set enrichment analysis (Agilent probes) (workflow) [1,575 bytes]
- (hist) Site search on gene set (analysis) [1,576 bytes]
- (hist) Diagram view part (extension point) [1,578 bytes]
- (hist) Create matrix by mixture of normal components (analysis) [1,579 bytes]
- (hist) Identify enriched motifs in promoters (GTRD) (workflow) [1,592 bytes]
- (hist) Regression analysis [1,595 bytes]
- (hist) ROC-curves in overlapped ChIP-Seq peaks (analysis) [1,596 bytes]
- (hist) ChIP-Seq - Identify and classify target genes (workflow) [1,597 bytes]
- (hist) Gene set enrichment analysis HumanPSD (Illumina probes) (workflow) [1,602 bytes]
- (hist) Gene set enrichment analysis HumanPSD (Affymetrix probes) (workflow) [1,610 bytes]
- (hist) ROC curves for best sites union (analysis) [1,612 bytes]
- (hist) Find genome variants and indels from full-genome NGS (workflow) [1,613 bytes]
- (hist) Analyze any DNA sequence for site enrichment (GTRD) (workflow) [1,619 bytes]
- (hist) Find shortest path between two sets (analysis) [1,620 bytes]
- (hist) Biouml.workbench (plugin) [1,626 bytes]
- (hist) Sites genome location (analysis) [1,628 bytes]
- (hist) Tools Comparison [1,630 bytes]
- (hist) ROC-curves in clusterized peaks (analysis) [1,636 bytes]
- (hist) Mapping to ontologies for multiple gene sets (TRANSPATH(R)) (workflow) [1,637 bytes]
- (hist) Mapping to ontologies for multiple gene sets (HumanPSD(TM)) (workflow) [1,637 bytes]
- (hist) Find master regulators in networks with context genes (TRANSPATH(R)) (workflow) [1,651 bytes]
- (hist) Find common effectors for multiple gene sets (GeneWays) (workflow) [1,663 bytes]
- (hist) VCF format [1,678 bytes]
- (hist) Ensembl [1,682 bytes]
- (hist) Visual modeling [1,683 bytes]
- (hist) Prediction of TF-binding sites of given TF (analysis) [1,686 bytes]
- (hist) Analyze miRNA target enrichment (analysis) [1,686 bytes]
- (hist) Metabolic Control Analysis [1,702 bytes]
- (hist) Galaxy installation [1,705 bytes]
- (hist) DiChIPHorde (analysis) [1,721 bytes]
- (hist) Gene set enrichment analysis (Affymetrix probes) (workflow) [1,723 bytes]
- (hist) Gene set enrichment analysis (Illumina probes) (workflow) [1,728 bytes]
- (hist) Effector search (analysis) [1,729 bytes]
- (hist) Find master regulators for multiple gene sets (GeneWays) (workflow) [1,735 bytes]
- (hist) Stoichiometric Matrix (analysis) [1,737 bytes]
- (hist) MSAT (analysis) [1,738 bytes]
- (hist) ChIPHorde (analysis) [1,739 bytes]
- (hist) PredictStartSites (analysis) [1,744 bytes]
- (hist) Data (host object) [1,747 bytes]
- (hist) Analyze any DNA sequence (GTRD) (workflow) [1,748 bytes]
- (hist) Product [1,750 bytes]
- (hist) Convert site search summary (analysis) [1,753 bytes]
- (hist) Sensitivity Analysis [1,754 bytes]
- (hist) Fantom analysis [1,754 bytes]
- (hist) Calculate weighted mutation score (analysis) [1,757 bytes]
- (hist) SNP matching (analysis) [1,759 bytes]
- (hist) SPAdes [1,764 bytes]
- (hist) Mass Conservation Analysis [1,773 bytes]
- (hist) Cistrom construction (analysis) [1,773 bytes]
- (hist) GTEX Mutation effect on sites (analysis) [1,773 bytes]