Functional classification by diagrams (analysis)

From BioUML platform
Jump to: navigation, search
Analysis title
Data-Functional-classification-by-diagrams-icon.png Functional classification by diagrams
Provider
Institute of Systems Biology
Class
DiagramClassification
Plugin
biouml.plugins.enrichment (Enrichment analysis plugin)

Description

Functional classification by diagrams

Parameters:

  • Source data set – Input table having Ensembl genes as rows.
  • Type – Type
  • Path to classification root – Specify path to the folder containing classification tables, when 'Repository folder' is selected as classification. Only tables with 'Ensembl gene' type are used for the classification.
  • Reference collection – If specified, this collection will be used as list of all Ensembl genes for custom classification. If not specified, list of all Ensembl genes will be created by combining all categories.
  • Minimal hits to group – Groups with lower number of hits will be filtered out (nmin)
  • Only over-represented (expert) – If checked, under-represented groups will be excluded from the result
  • P-value threshold – P-value threshold (Pmax)
  • Result name – Name and path for the resulting table
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox