MicroRNA aligner (analysis)
From BioUML platform
- Analysis title
MicroRNA aligner
- Provider
- Institute of Systems Biology
- Class
MicroRNAAligner- Plugin
- ru.biosoft.bsastats (Bio-sequences analyses plugin extension)
Description
Aligns NGS reads to microRNA.
Parameters:
- Source – Whether to get input data from track or from FASTQ
- Input track – Track to process
- FASTQ file – FASTQ file with reads to analyze
- Quality encoding – This specifies how phred quality values are encoded in the FASTQ file. In most of the cases system detects this value automatically. You may change it manually if auto-detection worked incorrectly.
- CSFasta file – File containing reads in color space
- Qual file – File containing corresponding quality values
- miRNASequences – miRNASequences
- adapter – adapter
- matchScore – matchScore
- mismatchPenalty – mismatchPenalty
- gapPenalty – gapPenalty
- alignmentScoreThreshold – alignmentScoreThreshold
- threadCount – threadCount
- autoGeneratedQueryNames – autoGeneratedQueryNames
- unmapped – unmapped
- results – results
