Prepare GTF annotation (analysis)
From BioUML platform
- Analysis title
Prepare GTF annotation
- Provider
- Institute of Systems Biology
- Class
PrepareGTFAnnotation- Plugin
- biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)
Description
Prepare GTF annotation file from Ensembl database, this GTF can be used by Cufflinks.
Parameters:
- Ensembl database – Ensembl database to use
- TSS distance – Maximal distance between neighboring transcription start sites in cluster
- TSS groups – Table describing TSS groups
- Resulting annotation – Resulting annotation of genome in GTF format
