Linear Shifted Model (analysis)

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Analysis title
Default-analysis-icon.png Linear Shifted Model
Provider
Institute of Systems Biology
Class
LinearShiftedModelBuilding
Plugin
biouml.plugins.genemodels (Gene expression models building)

Description

Linear Shifted Model of gene expression regulation

Parameters:

  • Number of experiments – Number of experiments
  • Experiments – Experiments
  • Regulator list – Table with regulators ID
  • Target list – Table with regulators ID
  • P-value threshold – Only results with a P-value below this threshold will appear in the output
  • Output table – Output table
  • Maximum shift – Maximum shift between regulator and target
  • Shift definition – Shift definition
  • Include degradation – Include protein degradation in gene regulation model
  • Target smothing type – Smoothing type for target gene profile
    • Error – Spline error
  • Regulator smothing type – Smoothing type for regulator gene profile
    • Error – Spline error
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