ChIP-seq peak profile (analysis)

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Analysis title
BSA-ChIP-seq-peak-profile-icon.png ChIP-seq peak profile
Provider
Institute of Systems Biology
Class
ChIPSeqProfileAnalysis
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

This analysis computes probability profiles for Chip-seq peaks.

Parameters:

  • Peak track – Track with ChIP-seq peaks
  • Tag track – Track with aligned tags (reads)
  • Fragment size – Mean size of DNA fragments used in immunoprecipitation
  • Sigma – Sigma parameter used to model peak shape
  • Error rate – Error rate
  • Profiled track – Profiled track
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