Import HOCOMOCO (analysis)

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Analysis title
Default-analysis-icon.png Import HOCOMOCO
Provider
Institute of Systems Biology
Class
ImportHocomoco
Plugin
biouml.plugins.gtrd (GTRD)

Description

Imports HOCOMOCO database from flat files

Parameters:

  • PCM flat file – Position count matrix flat file
  • PWM flat file – Position weight matrix flat file
  • Thresholds table – Table with model thresholds
  • Uniprot matching table – Table witih ID corresponding to uniprot name and first columnt corresponding to uniprot id
  • Resulting matrix collection – Path to resulting matrix collection
  • Resulitng site model collection – Path to resulting site model collection
  • Resulting factor collection – Resulting factor collection
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