Make GTF for riboseq alignment (analysis)

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Analysis title
Default-analysis-icon.png Make GTF for riboseq alignment
Provider
Institute of Systems Biology
Class
GTFForRiboseqAlignment
Plugin
biouml.plugins.riboseq (RiboSeq Experiment)

Description

Convert BAM alignments on transcripts to alignments on genome

Parameters:

  • Transcript set – Set of transcripts to output into GTF file
    • Annotation source – Source of gene annotation
    • Transcripts annotation track – Track with transcripts annotation in BED format
    • Genome sequence – Collection of chromosomal sequences
    • Ensembl – Ensembl database version
    • Transcript subset – Subset of transcripts used in this analysis
    • GTF file – GTF file
  • Min UTR length – Extend untranlsated regions to this length
  • Only protein coding – Use only protein coding transcripts
  • Resulting GTF – Resulting GTF file
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