Fantom analysis

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Analysis title
Default-analysis-icon.png Fantom analysis
Provider
Institute of Systems Biology
Class
FantomAnalysis
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Analysis of FANTOM expression values by using GTRD peaks

Parameters:

  • Option – Please, select option (i.e. select the concrete session of given analysis).
  • Parameters for OPTION_01 – Parameters for OPTION_01
    • Path to input folder – Path to input folder
  • Parameters for OPTION_02 – Parameters for OPTION_02
    • Path to folder with tracks – Path to folder with tracks
    • Track names – Please, select track names
    • Path to file – Path to file
    • Sequences collection – Select a source of nucleotide sequences
      • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
      • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
    • Promoter regions – Promoter regions
  • Parameters for OPTION_03 – Parameters for OPTION_03
    • Path to input folder – Path to input folder
  • Parameters for OPTION_04 – Parameters for OPTION_04
    • Path to file – Path to file
    • Path to input folder – Path to input folder
    • Cell line – Cell line
  • Path to output folder – Path to output folder
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