Create database from diagram (analysis)

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Analysis title
Default-analysis-icon.png Create database from diagram
Provider
Institute of Systems Biology
Class
DiagramToDatabase
Plugin
biouml.plugins.metabolics (Metabolics Analysis)

Description

Create database from diagram

Parameters:

  • Diagram – Path to the diagram you want to convert to the database
  • ID extractor – An algorithm which matches diagram IDs (diagram-specific)
  • Species – Species
  • Use threshold for stop-molecules – Uncheck to specify stop-molecules list explicitly
  • Stop-molecule threshold – If molecule participates in more reactions than specified it will be marked as stop-molecule
  • Stop molecules list – Path to the table containing stop-molecules IDs
  • Stop-reaction threshold – If reaction has more reactants or products than the specified number, it will be marked as ignored
  • Database name – The name of the newly-created database
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