Track to gene set (analysis)

Analysis title

Track to gene set

Provider

Institute of Systems Biology

Class

TrackToGeneSet

Plugin

biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)

Description

Convert track to gene set (get all genes which lie near the sites from the track).

Parameters:

• Input tracks – Track(s) to be converted to genes
• Species – Taxonomical species
• 5' region size – Include 5' region (promoter) of given size in bp
• 3' region size – Include 3' region of given size in bp
• Types of resulting column – Types of resulting column
• allGenes – allGenes
• Output name – Output name