MicroRNA finder (analysis)

From BioUML platform
Jump to: navigation, search
Analysis title
Default-analysis-icon.png MicroRNA finder
Provider
Institute of Systems Biology
Class
MicroRNAFinder
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Finds novel microRNA from genomic alignments of NGS reads

Parameters:

  • Alignments – Genomic alignments of microRNA reads
  • Genome – Reference genome used for alignment
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Minimal cluster size – Minimal number of reads in cluster
  • Maximum read distance – Maxim distance between adjacent reads in cluster
  • Clusters – Resulting read clusters
  • Primary isoforms – Resulting primary microRNA isoforms
  • Longest isoforms – Resulting longest microRNA isoforms
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox