BAM filter strand specific (analysis)

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Analysis title
Default-analysis-icon.png BAM filter strand specific
Provider
Institute of Systems Biology
Class
FilterStrandSpecific
Plugin
biouml.plugins.riboseq (RiboSeq Experiment)

Description

Filter strand specific reads in BAM file

Parameters:

  • Input BAM track – BAM track to filter
  • Transcript set – Transcript set
    • Annotation source – Source of gene annotation
    • Transcripts annotation track – Track with transcripts annotation in BED format
    • Genome sequence – Collection of chromosomal sequences
    • Ensembl – Ensembl database version
    • Transcript subset – Subset of transcripts used in this analysis
    • GTF file – GTF file
  • Enabled (expert) – Enabled
  • Output BAM track – Output BAM track
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