Heterozygous site caller (analysis)

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Analysis title
Default-analysis-icon.png Heterozygous site caller
Provider
Institute of Systems Biology
Class
HeterozygousSiteCaller
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Find heterozygous sites from RNA-seq data

Parameters:

  • Alignment track – BAM track with aligned reads
  • Target track – Restrict search to sites from this track
  • Min reads – Minimal number of reads at genomic position to be considered
  • Minimal fraction of second allele – Minimal fraction of second allele
  • Output track – Output track
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