Protected pages
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- Data (host object) (1,747 bytes) (fully protected) (Protection log)
- Enrichment (host object) (1,033 bytes) (fully protected) (Protection log)
- DataFilter (host object) (690 bytes) (fully protected) (Protection log)
- Ensembl (host object) (398 bytes) (fully protected) (Protection log)
- Galaxy (host object) (276 bytes) (fully protected) (Protection log)
- Ftp (host object) (462 bytes) (fully protected) (Protection log)
- Microarray (host object) (2,388 bytes) (fully protected) (Protection log)
- ModelReduction (host object) (421 bytes) (fully protected) (Protection log)
- Model (host object) (2,586 bytes) (fully protected) (Protection log)
- Network (host object) (531 bytes) (fully protected) (Protection log)
- Normalize (host object) (857 bytes) (fully protected) (Protection log)
- Optimization (host object) (1,319 bytes) (fully protected) (Protection log)
- Sbml (host object) (569 bytes) (fully protected) (Protection log)
- Report (host object) (394 bytes) (fully protected) (Protection log)
- Sbw (host object) (529 bytes) (fully protected) (Protection log)
- SimulationEngine (host object) (1,246 bytes) (fully protected) (Protection log)
- SiteAnalysis (host object) (2,919 bytes) (fully protected) (Protection log)
- Table (host object) (347 bytes) (fully protected) (Protection log)
- Transform (host object) (1,798 bytes) (fully protected) (Protection log)
- Proteins - PDB (282 bytes) (fully protected) (Protection log)
- Structures - PDB (276 bytes) (fully protected) (Protection log)
- Category:Softberry plugins (94 bytes) (fully protected) (Protection log)
- Peaks to matrices (workflow) (593 bytes) (fully protected) (Protection log)
- Reads to matrices (workflow) (717 bytes) (fully protected) (Protection log)
- Category:Autosome.Ru workflows (94 bytes) (fully protected) (Protection log)
- Analyze SNP list (GTRD) (workflow) (2,267 bytes) (fully protected) (Protection log)
- Analyze SNP list (TRANSFAC(R)) (workflow) (2,262 bytes) (fully protected) (Protection log)
- Gene set enrichment analysis - select a classification (Gene table) (workflow) (1,405 bytes) (fully protected) (Protection log)
- Probes - Affymetrix ST (807 bytes) (fully protected) (Protection log)
- Template:Reference types (8,291 bytes) (fully protected) (Protection log)
- Template:Web tree actions (2,240 bytes) (fully protected) (Protection log)
- Template:Web toolbar actions (2,211 bytes) (fully protected) (Protection log)
- Binding regions summary (analysis) (1,082 bytes) (fully protected) (Protection log)
- Gathering genome statistics (analysis) (1,294 bytes) (fully protected) (Protection log)
- Merge binding regions for cell-lines (analysis) (1,572 bytes) (fully protected) (Protection log)
- Non-merged ChIP-Seq tracks summary (analysis) (1,320 bytes) (fully protected) (Protection log)
- Category:Binding regions (analyses group) (97 bytes) (fully protected) (Protection log)
- Cis-module identification (analysis) (894 bytes) (fully protected) (Protection log)
- Count olig frequencies (analysis) (906 bytes) (fully protected) (Protection log)
- Create matrix by mixture of normal components (analysis) (1,579 bytes) (fully protected) (Protection log)
- Mixture of normal components (analysis) (1,853 bytes) (fully protected) (Protection log)
- Distinct TF classes (analysis) (1,279 bytes) (fully protected) (Protection log)
- IPS prediction (analysis) (1,250 bytes) (fully protected) (Protection log)
- IPS ROC-curves (analysis) (1,467 bytes) (fully protected) (Protection log)
- Categories - ExPASy (398 bytes) (fully protected) (Protection log)
- Install ExPASy (analysis) (449 bytes) (fully protected) (Protection log)
- Biouml.plugins.expasy (plugin) (583 bytes) (fully protected) (Protection log)
- Extract ribosomal RNA (analysis) (891 bytes) (fully protected) (Protection log)
- ChIP-Seq characteristics distribution (analysis) (874 bytes) (fully protected) (Protection log)
- Biouml.plugins.antimony (plugin) (323 bytes) (fully protected) (Protection log)
- IPS-scores in SNPs (analysis) (1,173 bytes) (fully protected) (Protection log)
- SNP regions in genome (analysis) (1,191 bytes) (fully protected) (Protection log)
- SNPs in binding regions (analysis) (1,091 bytes) (fully protected) (Protection log)
- Biouml.plugins.bindingregions (plugin) (5,919 bytes) (fully protected) (Protection log)
- Common and IPS scores correlation (analysis) (1,344 bytes) (fully protected) (Protection log)
- ChIP experiment - GTRD (283 bytes) (fully protected) (Protection log)
- Proteins - NCBI (521 bytes) (fully protected) (Protection log)
- Categories - Gene ontology (539 bytes) (fully protected) (Protection log)
- Pathways (reference type) (282 bytes) (fully protected) (Protection log)
- Categories (reference type) (286 bytes) (fully protected) (Protection log)
- Enzymes - KEGG (292 bytes) (fully protected) (Protection log)
- Correlations of best sites (analysis) (1,476 bytes) (fully protected) (Protection log)
- Locations of best sites (analysis) (1,442 bytes) (fully protected) (Protection log)
- ROC curves for best sites union (analysis) (1,612 bytes) (fully protected) (Protection log)
- Enzymes - ExPASy (283 bytes) (fully protected) (Protection log)
- Clean up SQL database (analysis) (923 bytes) (fully protected) (Protection log)
- Extract RNA length (analysis) (826 bytes) (fully protected) (Protection log)
- MicroRNA finder (analysis) (1,225 bytes) (fully protected) (Protection log)
- Filter duplicate rows (analysis) (829 bytes) (fully protected) (Protection log)
- Group table rows (analysis) (664 bytes) (fully protected) (Protection log)
- Stem loop predictor (analysis) (1,017 bytes) (fully protected) (Protection log)
- GTRD statistics (4,542 bytes) (fully protected) (Protection log)
- Join GTRD Tracks (analysis) (605 bytes) (fully protected) (Protection log)
- Prepare Search by regulation (analysis) (632 bytes) (fully protected) (Protection log)
- Search binding sites (analysis) (1,081 bytes) (fully protected) (Protection log)
- KEGG (reference type) (368 bytes) (fully protected) (Protection log)
- Cluster track (analysis) (1,099 bytes) (fully protected) (Protection log)
- Color space to nucleotide (analysis) (559 bytes) (fully protected) (Protection log)
- Map Transfac sites to genome (analysis) (781 bytes) (fully protected) (Protection log)
- Perfectosape (analysis) (906 bytes) (fully protected) (Protection log)
- Antimony (file format) (446 bytes) (fully protected) (Protection log)
- Perfectosape (host object) (521 bytes) (fully protected) (Protection log)
- Biouml.plugins.perfectosape (plugin) (484 bytes) (fully protected) (Protection log)
- Analysis of Binding Regions (analysis) (3,596 bytes) (fully protected) (Protection log)
- Split fasta (analysis) (608 bytes) (fully protected) (Protection log)
- Peak finders comparison (analysis) (1,034 bytes) (fully protected) (Protection log)
- Summary on AUCs (analysis) (1,030 bytes) (fully protected) (Protection log)
- Node (host object) (601 bytes) (fully protected) (Protection log)
- Biouml.plugins.node (plugin) (317 bytes) (fully protected) (Protection log)
- Biouml.plugins.pharm (plugin) (546 bytes) (fully protected) (Protection log)
- Ru.biosoft.graphics (plugin) (197 bytes) (fully protected) (Protection log)
- Probes - Affymetrix HG-U133+ PM (559 bytes) (fully protected) (Protection log)
- Probes - Agilent Tox Array (420 bytes) (fully protected) (Protection log)
- Substances - ChEBI (730 bytes) (fully protected) (Protection log)
- Rebuild search indexes (analysis) (627 bytes) (fully protected) (Protection log)
- Blast alignment coverage (analysis) (630 bytes) (fully protected) (Protection log)
- Apply CMA model to tracks (analysis) (790 bytes) (fully protected) (Protection log)
- Create profile from site model table (analysis) (939 bytes) (fully protected) (Protection log)
- Mutation effect on sites (analysis) (1,874 bytes) (fully protected) (Protection log)
- Prepare GTF annotation (analysis) (866 bytes) (fully protected) (Protection log)
- Remove overlapping sites (analysis) (2,362 bytes) (fully protected) (Protection log)
- Transcript set to track (analysis) (974 bytes) (fully protected) (Protection log)
- CRISPR Cas9 and specific oligonucleotides (analysis) (1,296 bytes) (fully protected) (Protection log)
- Cis-module sets near given genes (analysis) (1,503 bytes) (fully protected) (Protection log)
- Convert files to tracks (analysis) (1,131 bytes) (fully protected) (Protection log)
- Filtration of predicted sites by filters (analysis) (1,307 bytes) (fully protected) (Protection log)
- ChIP-Seq peaks clusterization (analysis) (1,054 bytes) (fully protected) (Protection log)
- Identical best site ROC-curves (analysis) (1,549 bytes) (fully protected) (Protection log)
- Identification of cis-regulatory modules with given pattern of TF-classes (analysis) (1,200 bytes) (fully protected) (Protection log)
- Identification of composite elements by filters (analysis) (1,365 bytes) (fully protected) (Protection log)
- Matrix comparison (analysis) (1,319 bytes) (fully protected) (Protection log)
- Prediction of TF-binding sites of given TF (analysis) (1,686 bytes) (fully protected) (Protection log)
- ROC-curves in grouped peaks (analysis) (1,532 bytes) (fully protected) (Protection log)
- ROC-curves in clusterized peaks (analysis) (1,636 bytes) (fully protected) (Protection log)
- ROC-curves in overlapped ChIP-Seq peaks (analysis) (1,596 bytes) (fully protected) (Protection log)
- Two multivariate sample analysis (813 bytes) (fully protected) (Protection log)
- Annotate diagram (analysis) (757 bytes) (fully protected) (Protection log)
- Diagram graph compare analysis (1,347 bytes) (fully protected) (Protection log)
- Remove unobservable molecules (analysis) (804 bytes) (fully protected) (Protection log)
- Share molecules (analysis) (622 bytes) (fully protected) (Protection log)
- BioNetGen language format (9,051 bytes) (fully protected) (Protection log)
- Hemodynamics model (file format) (740 bytes) (fully protected) (Protection log)
- Add reactants (analysis) (1,276 bytes) (fully protected) (Protection log)
- ArticleTrackCreator (analysis) (750 bytes) (fully protected) (Protection log)
- CoverageCheker (analysis) (782 bytes) (fully protected) (Protection log)
- FinderArticlePoints (analysis) (829 bytes) (fully protected) (Protection log)
- ArticleComparator (analysis) (841 bytes) (fully protected) (Protection log)
- SVM (analysis) (730 bytes) (fully protected) (Protection log)
- SelectionTrustClusters (analysis) (771 bytes) (fully protected) (Protection log)
- RiboSeqExp (analysis) (780 bytes) (fully protected) (Protection log)
- Differential expression with DESeq (analysis) (857 bytes) (fully protected) (Protection log)
- RiboseqArticleResult (analysis) (581 bytes) (fully protected) (Protection log)
- Convert identifiers for multiple gene sets (workflow) (1,054 bytes) (fully protected) (Protection log)
- Quantification of RNA-seq with Cufflinks for multiple BAM files (workflow) (2,588 bytes) (fully protected) (Protection log)
- Analyze any DNA sequence (GTRD) (workflow) (1,748 bytes) (fully protected) (Protection log)
- Analyze any DNA sequence for site enrichment (GTRD) (workflow) (1,619 bytes) (fully protected) (Protection log)
- Identify enriched motifs in promoters (GTRD) (workflow) (1,592 bytes) (fully protected) (Protection log)
- Identify composite modules in promoters (TRANSFAC(R)) (workflow) (556 bytes) (fully protected) (Protection log)
- Analyze any DNA sequence for site enrichment (TRANSFAC(R)) (workflow) (2,118 bytes) (fully protected) (Protection log)
- Analyze any DNA sequence (TRANSFAC(R)) (workflow) (2,130 bytes) (fully protected) (Protection log)
- Identify enriched composite modules in promoters (TRANSFAC(R)) (workflow) (513 bytes) (fully protected) (Protection log)
- Identify enriched motifs in promoters (TRANSFAC(R)) (workflow) (541 bytes) (fully protected) (Protection log)
- ChIP-Seq - Identify and classify target genes (TRANSPATH(R)) (workflow) (708 bytes) (fully protected) (Protection log)
- Biouml.plugins.affymetrix (plugin) (1,474 bytes) (fully protected) (Protection log)
- Biouml.plugins.agilent (plugin) (367 bytes) (fully protected) (Protection log)
- Biouml.plugins.download (plugin) (487 bytes) (fully protected) (Protection log)
- Biouml.plugins.dropbox (plugin) (193 bytes) (fully protected) (Protection log)
- Biouml.plugins.googledrive (plugin) (202 bytes) (fully protected) (Protection log)
- Biouml.plugins.glycan (plugin) (181 bytes) (fully protected) (Protection log)
- Biouml.plugins.mirbase (plugin) (549 bytes) (fully protected) (Protection log)
- Biouml.plugins.riboseqArticleResult (plugin) (371 bytes) (fully protected) (Protection log)
- Biouml.plugins.riboseq (plugin) (2,935 bytes) (fully protected) (Protection log)
- Ru.biosoft.fs (plugin) (314 bytes) (fully protected) (Protection log)
- Ru.biosoft.bsa.server (plugin) (211 bytes) (fully protected) (Protection log)
- Ru.biosoft.plugins.graph (plugin) (336 bytes) (fully protected) (Protection log)
- Ru.biosoft.vm (plugin) (201 bytes) (fully protected) (Protection log)
- Category:RiboSeq (analyses group) (89 bytes) (fully protected) (Protection log)
- Category:RiboseqArticleResult (analyses group) (102 bytes) (fully protected) (Protection log)
- Probes - Affymetrix HuGene-2-1-st (551 bytes) (fully protected) (Protection log)
- Probes - Affymetrix HuGene-2-0-st (551 bytes) (fully protected) (Protection log)
- Probes - Affymetrix RaGene-2-0-st (551 bytes) (fully protected) (Protection log)
- Probes - Affymetrix miRNA-3-0 (559 bytes) (fully protected) (Protection log)
- Probes - Affymetrix miRNA-2-0 (559 bytes) (fully protected) (Protection log)
- Probes - Affymetrix miRNA-4-0 (539 bytes) (fully protected) (Protection log)
- MiRNA - miRBase (284 bytes) (fully protected) (Protection log)
- LincRNA and mRNA features (analysis) (1,073 bytes) (fully protected) (Protection log)
- Probes - Affymetrix miRNA-1-0 (559 bytes) (fully protected) (Protection log)
- Copy data element (analysis) (543 bytes) (fully protected) (Protection log)
- Create database from diagram (analysis) (1,177 bytes) (fully protected) (Protection log)
- Compute profile thresholds (analysis) (819 bytes) (fully protected) (Protection log)
- Count reads in transcripts (analysis) (1,290 bytes) (fully protected) (Protection log)
- Double encode SOLiD (analysis) (629 bytes) (fully protected) (Protection log)
- Classification analysis (1,425 bytes) (fully protected) (Protection log)
- Cluster analysis (1,134 bytes) (fully protected) (Protection log)
- Multivariate regression analysis (1,189 bytes) (fully protected) (Protection log)
- Multivariate sample analysis (938 bytes) (fully protected) (Protection log)
- Regression analysis (1,595 bytes) (fully protected) (Protection log)
- Ribo-Seq and mRNA features forming (analysis) (2,921 bytes) (fully protected) (Protection log)
- Algebraic steady state (analysis) (1,241 bytes) (fully protected) (Protection log)
- Quasi-Steady-State Analysis (4,323 bytes) (fully protected) (Protection log)
- Change diagram (analysis) (534 bytes) (fully protected) (Protection log)
- Create state (analysis) (546 bytes) (fully protected) (Protection log)
- Recon transformer (analysis) (585 bytes) (fully protected) (Protection log)
- BioPAX file (488 bytes) (fully protected) (Protection log)
- SBGN-ML (file format) (615 bytes) (fully protected) (Protection log)
- SEDX archive (file format) (512 bytes) (fully protected) (Protection log)
- BuildASiteOffsetTable (analysis) (1,200 bytes) (fully protected) (Protection log)
- BuildProfileModel (analysis) (1,800 bytes) (fully protected) (Protection log)
- ComputeTranscriptProfile (analysis) (1,523 bytes) (fully protected) (Protection log)
- PredictStartSites (analysis) (1,744 bytes) (fully protected) (Protection log)
- Set initial values from simulation result (analysis) (666 bytes) (fully protected) (Protection log)
- Merge simulation results (analysis) (627 bytes) (fully protected) (Protection log)
- Download model (analysis) (508 bytes) (fully protected) (Protection log)
- Analyze any DNA sequence, EMBL (workflow) (1,283 bytes) (fully protected) (Protection log)
- Analyze any DNA sequence, Fasta (workflow) (1,276 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes (Agilent Tox probes) (workflow) (2,230 bytes) (fully protected) (Protection log)
- Analyze any DNA sequence, GeneBank (workflow) (1,291 bytes) (fully protected) (Protection log)
- Explain my genes (workflow) (1,252 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes using EBarrays (workflow) (2,813 bytes) (fully protected) (Protection log)
- Compute differentially expressed genes using Limma (workflow) (2,714 bytes) (fully protected) (Protection log)
- Find common effectors for multiple gene sets (GeneWays) (workflow) (1,663 bytes) (fully protected) (Protection log)
- Find gene fusions from RNA-seq (workflow) (1,965 bytes) (fully protected) (Protection log)
- Find genome variants and indels from RNA-seq (workflow) (2,357 bytes) (fully protected) (Protection log)
- Find genome variants and indels from full-genome NGS (workflow) (1,613 bytes) (fully protected) (Protection log)
- Mapping to GO ontologies and comparison for two gene sets (workflow) (2,042 bytes) (fully protected) (Protection log)
- Mapping to ontology - select a classification (Gene table) (workflow) (1,803 bytes) (fully protected) (Protection log)
- Mapping to ontology - select a classification (2 Gene tables) (workflow) (1,810 bytes) (fully protected) (Protection log)
- Mapping to ontology - select a classification (Multiple Gene tables) (workflow) (2,114 bytes) (fully protected) (Protection log)
- Prediction of miRNA binding sites (workflow) (1,435 bytes) (fully protected) (Protection log)
- Quantification of RNA-seq with Cufflinks (no de-novo assembly) for FASTQ files (workflow) (2,085 bytes) (fully protected) (Protection log)
- Quantification of RNA-seq with Cufflinks (with de-novo assembly) for FASTQ files (workflow) (2,322 bytes) (fully protected) (Protection log)
- SRA to FASTQ (workflow) (1,181 bytes) (fully protected) (Protection log)
- Find enriched TF binding sites in variation sites (TRANSFAC(R)) (workflow) (439 bytes) (fully protected) (Protection log)
- Identify enriched motifs in tracks (TRANSFAC(R)) (workflow) (709 bytes) (fully protected) (Protection log)
- Enriched upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (552 bytes) (fully protected) (Protection log)
- Mapping to ontologies and comparison for two gene sets (TRANSPATH(R)) (workflow) (407 bytes) (fully protected) (Protection log)
- Find common effectors for multiple gene sets (TRANSPATH(R)) (workflow) (481 bytes) (fully protected) (Protection log)
- Substances - KEGG (620 bytes) (fully protected) (Protection log)
- Substances - DrugBank (825 bytes) (fully protected) (Protection log)
- Substances - CAS (693 bytes) (fully protected) (Protection log)
- Substances (reference type) (288 bytes) (fully protected) (Protection log)
- Proteins - Transpath isogroups (480 bytes) (fully protected) (Protection log)
- Create custom project (analysis) (787 bytes) (fully protected) (Protection log)
- BAM filter multi-hits (analysis) (601 bytes) (fully protected) (Protection log)
- Import ensembl homology (analysis) (614 bytes) (fully protected) (Protection log)
- Import HOCOMOCO (analysis) (1,026 bytes) (fully protected) (Protection log)
- Add genes from CMA (analysis) (1,272 bytes) (fully protected) (Protection log)
- Compare TFBS mutations (analysis) (1,471 bytes) (fully protected) (Protection log)
- Construct composite modules on tracks with keynodes (analysis) (4,196 bytes) (fully protected) (Protection log)
- Construct composite modules with keynodes (analysis) (4,052 bytes) (fully protected) (Protection log)
- Convert site search summary (analysis) (1,753 bytes) (fully protected) (Protection log)
- Get transcripts track (analysis) (804 bytes) (fully protected) (Protection log)
- Recalculate composite module score on new track (analysis) (1,131 bytes) (fully protected) (Protection log)
- Site search report (analysis) (901 bytes) (fully protected) (Protection log)
- LS-regression analysis (888 bytes) (fully protected) (Protection log)
- Oligonucleotides in sequence samples (analysis) (952 bytes) (fully protected) (Protection log)
- Matrix derivation (analysis) (2,518 bytes) (fully protected) (Protection log)
- Colon cancer signature2 (analysis) (686 bytes) (fully protected) (Protection log)
- Univariate samples analysis (1,160 bytes) (fully protected) (Protection log)
- Colon cancer signature (analysis) (1,208 bytes) (fully protected) (Protection log)
- Univariate sample analysis (1,138 bytes) (fully protected) (Protection log)
- Apply events (analysis) (2,582 bytes) (fully protected) (Protection log)
- Transform track to table (analysis) (1,397 bytes) (fully protected) (Protection log)
- Generate dynamic model (analysis) (816 bytes) (fully protected) (Protection log)
- Parameter identifiability (optimization) (analysis) (1,345 bytes) (fully protected) (Protection log)
- Parameter fitting (analysis) (2,734 bytes) (fully protected) (Protection log)
- Key Node Sensitivity Analysis (2,974 bytes) (fully protected) (Protection log)
- Parameter identifiability (table) (analysis) (2,069 bytes) (fully protected) (Protection log)
- Score based FBC table builder (analysis) (4,400 bytes) (fully protected) (Protection log)
- Run a Workflow as Analysis (738 bytes) (fully protected) (Protection log)
- Functional classification by diagrams (analysis) (1,512 bytes) (fully protected) (Protection log)
- Create flat files (analysis) (570 bytes) (fully protected) (Protection log)
- SEEK Synchronize (analysis) (727 bytes) (fully protected) (Protection log)
- Match genes and metabolites (analysis) (910 bytes) (fully protected) (Protection log)
- Join GTRD clusters (analysis) (774 bytes) (fully protected) (Protection log)
- Make meta tracks (analysis) (732 bytes) (fully protected) (Protection log)
- Merge peak callers (analysis) (690 bytes) (fully protected) (Protection log)
- Merge peaks (analysis) (817 bytes) (fully protected) (Protection log)
- Prepare cluster to exp table (analysis) (658 bytes) (fully protected) (Protection log)
- Open tracks for all TF (analysis) (753 bytes) (fully protected) (Protection log)
- Open per TF view (analysis) (546 bytes) (fully protected) (Protection log)
- Cluster by path (analysis) (1,193 bytes) (fully protected) (Protection log)
- Simulate Population (analysis) (704 bytes) (fully protected) (Protection log)
- Find longest connected chains (analysis) (2,312 bytes) (fully protected) (Protection log)
- BAM filter strand specific (analysis) (1,030 bytes) (fully protected) (Protection log)
- Sample population (analysis) (2,977 bytes) (fully protected) (Protection log)
- Find shortest path between two sets (analysis) (1,620 bytes) (fully protected) (Protection log)
- ComputeProfileSums (analysis) (1,350 bytes) (fully protected) (Protection log)
- Convert genomic BAM to transcriptomic (analysis) (1,174 bytes) (fully protected) (Protection log)
- Estimate read density (analysis) (1,425 bytes) (fully protected) (Protection log)
- Large sequence minimal unique length (analysis) (795 bytes) (fully protected) (Protection log)
- Transcript structure analysis (882 bytes) (fully protected) (Protection log)
- Find unmappable regions (analysis) (848 bytes) (fully protected) (Protection log)
- Make GTF for riboseq alignment (analysis) (1,146 bytes) (fully protected) (Protection log)
- Sequence minimal unique length (analysis) (737 bytes) (fully protected) (Protection log)
- Isoform TE (analysis) (1,334 bytes) (fully protected) (Protection log)
- Transcriptome mappability (analysis) (1,544 bytes) (fully protected) (Protection log)
- Plot2D (analysis) (555 bytes) (fully protected) (Protection log)
- Report (analysis) (562 bytes) (fully protected) (Protection log)
- Transcriptome minimal unique length (analysis) (1,116 bytes) (fully protected) (Protection log)
- Sequence mappability (analysis) (1,057 bytes) (fully protected) (Protection log)
- Flux Balance Analysis (workflow) (747 bytes) (fully protected) (Protection log)
- Hypergeometric analysis for multiple inputs (workflow) (2,376 bytes) (fully protected) (Protection log)
- Quantification of RNA-seq in BAM format for mouse mm9 single end (workflow) (402 bytes) (fully protected) (Protection log)
- Quantification of RNA-seq in FASTQ format for mouse mm9 single end (workflow) (410 bytes) (fully protected) (Protection log)
- Identify enriched composite modules in promoters (GTRD) (workflow) (2,040 bytes) (fully protected) (Protection log)
- Identify enriched motifs in tissue specific tracks (TRANSFAC(R)) (workflow) (807 bytes) (fully protected) (Protection log)
- Find master regulators in networks with context genes (TRANSPATH(R)) (workflow) (1,651 bytes) (fully protected) (Protection log)
- Identify enriched motifs in tissue specific promoters (TRANSFAC(R)) (workflow) (804 bytes) (fully protected) (Protection log)
- Cross-species identification of enriched motifs in promoters, using orthologue information (TRANSFAC(R)) (workflow) (646 bytes) (fully protected) (Protection log)
- Find 10 master regulators in networks (TRANSPATH(R)) (workflow) (1,520 bytes) (fully protected) (Protection log)
- Find master regulators in mutated network (workflow) (370 bytes) (fully protected) (Protection log)
- Find 3 master regulators in networks with context genes (TRANSPATH(R)) (workflow) (1,571 bytes) (fully protected) (Protection log)
- Focused upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (550 bytes) (fully protected) (Protection log)
- Upstream analysis with feedback loop (TRANSFAC(R) and TRANSPATH(R)) (workflow) (2,899 bytes) (fully protected) (Protection log)
- Search for self-regulating transcription factors (TRANSFAC(R) and TRANSPATH(R)) (workflow) (596 bytes) (fully protected) (Protection log)
- Biouml.plugins.ccsignature (plugin) (1,014 bytes) (fully protected) (Protection log)
- Biouml.plugins.metabolics (plugin) (497 bytes) (fully protected) (Protection log)
- Biouml.plugins.genomeenhancer (plugin) (2,086 bytes) (fully protected) (Protection log)
- Com.developmentontheedge.beans (plugin) (178 bytes) (fully protected) (Protection log)
- Biouml.plugins.seek (plugin) (345 bytes) (fully protected) (Protection log)
- Category:Colon cancer signature (analyses group) (104 bytes) (fully protected) (Protection log)
- Category:Biosoft analyses (88 bytes) (fully protected) (Protection log)
- Category:Population (analyses group) (92 bytes) (fully protected) (Protection log)
- Category:Biosoft plugins (86 bytes) (fully protected) (Protection log)
- Drugs - DrugBank (305 bytes) (fully protected) (Protection log)
- Categories - BKL (308 bytes) (fully protected) (Protection log)
- Substances - Pharmaceutical compounds (464 bytes) (fully protected) (Protection log)
- Substances - DrugBank (geneXplain) (474 bytes) (fully protected) (Protection log)
- Mature-miRNA - miRBase (305 bytes) (fully protected) (Protection log)
- Stem-loop-miRNA - miRBase (312 bytes) (fully protected) (Protection log)
- Methylation probes - Illumina (433 bytes) (fully protected) (Protection log)
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