Identify enriched motifs in tissue specific promoters (TRANSFAC(R)) (workflow)

From BioUML platform
Jump to: navigation, search
Workflow title
Identify enriched motifs in tissue specific promoters (TRANSFAC(R))
Provider
geneXplain GmbH

Workflow overview

Identify-enriched-motifs-in-tissue-specific-promoters-TRANSFAC-R-workflow-overview.png

Parameters

Input Yes genes
Species
Sequence source
Tissue_condition
Select tissue condition
TSS selction
Profile
Filter by Coefficient
The resulting table "Enriched motifs MEALR" will be filtered by the column Coefficient. The default filter is set to have 75% of true discovery rate, TDR. For 90% TDR, you can set this field to 0,270 and for 50% TDR to 0.05593. The filtered sited are used for the resulting visualization on genome browser.
Result folder
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox