SiteAnalysis (host object)
From BioUML platform
- Host object name
- siteAnalysis
- Class
JavaScriptSiteAnalysis
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
JavaScript host object:
ScriptableObject siteAnalysis
Analyses related to sites, sequences and tracks
Functions:
- String bowtie({parameters})
- Launches analysis "Bowtie"
- String filterCondition({parameters})
- Launches analysis "Filter track by condition"
- String filterProfileByGeneSet({parameters})
- Launches analysis "Create profile from gene table"
- String geneOverlap({parameters})
- Launches analysis "Gene overlap statistics"
- String geneSetToTrack({parameters})
- Launches analysis "Gene set to track"
- String joinTracks({parameters})
- Launches analysis "Join tracks"
- String mergeStats({parameters})
- Launches analysis "Merge track statistics"
- String motifDiscoveryIPS({parameters})
- Launches analysis "IPS motif discovery"
- String preprocessReads({parameters})
- Launches analysis "Preprocess raw reads"
- String profileFromTable({parameters})
- Launches analysis "Create profile from site model table"
- String siteDistribution({parameters})
- Launches analysis "Site distribution"
- String siteModelsToProteins({parameters})
- Launches analysis "Convert site models to proteins"
- String tableToTrack({parameters})
- Launches analysis "Convert table to track"
- String trackCoverage({parameters})
- Launches analysis "Track coverage"
- String trackStats({parameters})
- Launches analysis "Track statistics"
- String transcriptSetToTrack({parameters})
- Launches analysis "Transcript set to track"