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- Modeling Antihypertensive drugs (18:38, 21 January 2019)
- DAE Models examples (13:23, 12 March 2019)
- Drugs - DrugBank (16:30, 12 March 2019)
- Categories - BKL (16:30, 12 March 2019)
- Substances - DrugBank (geneXplain) (16:30, 12 March 2019)
- Substances - Pharmaceutical compounds (16:30, 12 March 2019)
- Proteins - Reactome (16:30, 12 March 2019)
- Stem-loop-miRNA - miRBase (16:30, 12 March 2019)
- Mature-miRNA - miRBase (16:30, 12 March 2019)
- Substances - ChEBI (16:30, 12 March 2019)
- Methylation probes - Illumina (16:31, 12 March 2019)
- Proteins - UniProt (16:31, 12 March 2019)
- Probes - Affymetrix HTA-2-0 (16:31, 12 March 2019)
- Classification analysis (16:32, 12 March 2019)
- Data matrix operations (analysis) (16:32, 12 March 2019)
- LS-regression analysis (16:32, 12 March 2019)
- Regression analysis (16:32, 12 March 2019)
- LincRNA and mRNA features (analysis) (16:32, 12 March 2019)
- Colon cancer signature2 (analysis) (16:32, 12 March 2019)
- Calculate TFs regulatory score (analysis) (16:33, 12 March 2019)
- Cytoscape network format (16:33, 12 March 2019)
- Add expression values (analysis) (16:33, 12 March 2019)
- Add reactants (analysis) (16:33, 12 March 2019)
- Find longest connected chains (analysis) (16:33, 12 March 2019)
- Find shortest path between two sets (analysis) (16:33, 12 March 2019)
- Regulator search (analysis) (16:33, 12 March 2019)
- Bsa (host object) (16:34, 12 March 2019)
- Enrichment (host object) (16:34, 12 March 2019)
- Model (host object) (16:34, 12 March 2019)
- Normalize (host object) (16:34, 12 March 2019)
- Analyze any DNA sequence, EMBL (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes (Affymetrix probes) (workflow) (16:34, 12 March 2019)
- ChIP-Seq - Identify and classify target genes (workflow) (16:34, 12 March 2019)
- Analyze any DNA sequence, Fasta (workflow) (16:34, 12 March 2019)
- Analyze any DNA sequence, GeneBank (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes (Agilent Tox probes) (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes (Agilent probes) (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes (Illumina probes) (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes using Hypergeometric test (Illumina probes) (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes using Hypergeometric test (Affymetrix probes) (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes using Hypergeometric test (Agilent probes) (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes using Limma (workflow) (16:34, 12 March 2019)
- Convert identifiers for multiple gene sets (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes using EBarrays (workflow) (16:34, 12 March 2019)
- Find common effectors for multiple gene sets (GeneWays) (workflow) (16:34, 12 March 2019)
- Explain my genes (workflow) (16:34, 12 March 2019)
- Find gene fusions from RNA-seq (workflow) (16:34, 12 March 2019)
- Find genome variants and indels from RNA-seq (workflow) (16:34, 12 March 2019)
- Find genome variants and indels from full-genome NGS (workflow) (16:34, 12 March 2019)
- Find common effectors in networks (GeneWays) (workflow) (16:34, 12 March 2019)
- Find master regulators for multiple gene sets (GeneWays) (workflow) (16:34, 12 March 2019)
- Find master regulators in networks (GeneWays) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis (Agilent probes) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis (Affymetrix probes) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis (Gene table) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis (Illumina probes) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis - select a classification (Gene table) (workflow) (16:34, 12 March 2019)
- Mapping to GO ontologies and comparison for two gene sets (workflow) (16:34, 12 March 2019)
- Hypergeometric analysis for multiple inputs (workflow) (16:34, 12 March 2019)
- Mapping to ontologies for multiple gene sets (workflow) (16:34, 12 March 2019)
- Mapping to ontologies (Gene table) (workflow) (16:34, 12 March 2019)
- Prediction of miRNA binding sites (workflow) (16:34, 12 March 2019)
- Mapping to ontology - select a classification (2 Gene tables) (workflow) (16:34, 12 March 2019)
- Mapping to ontology - select a classification (Gene table) (workflow) (16:34, 12 March 2019)
- Mapping to ontology - select a classification (Multiple Gene tables) (workflow) (16:34, 12 March 2019)
- Quantification of RNA-seq with Cufflinks (no de-novo assembly) for FASTQ files (workflow) (16:34, 12 March 2019)
- Quantification of RNA-seq with Cufflinks (with de-novo assembly) for FASTQ files (workflow) (16:34, 12 March 2019)
- Quantification of RNA-seq with Cufflinks for multiple BAM files (workflow) (16:34, 12 March 2019)
- SRA to FASTQ (workflow) (16:34, 12 March 2019)
- Analyze SNP list (GTRD) (workflow) (16:34, 12 March 2019)
- Analyze any DNA sequence (GTRD) (workflow) (16:34, 12 March 2019)
- Analyze any DNA sequence for site enrichment (GTRD) (workflow) (16:34, 12 March 2019)
- Analyze promoters (GTRD) (workflow) (16:34, 12 March 2019)
- Identify enriched composite modules in promoters (GTRD) (workflow) (16:34, 12 March 2019)
- Identify enriched motifs in promoters (GTRD) (workflow) (16:34, 12 March 2019)
- ChIP-Seq - Identify and classify target genes (HumanPSD(TM)) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis HumanPSD (Affymetrix probes) (workflow) (16:34, 12 March 2019)
- Cross-species mapping to ontologies, using orthologue information (HumanPSD(TM)) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis HumanPSD (Agilent probes) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis HumanPSD (Gene table) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis HumanPSD (Illumina probes) (workflow) (16:34, 12 March 2019)
- Mapping to ontologies (HumanPSD(TM)) (workflow) (16:34, 12 March 2019)
- Mapping to ontologies and comparison for two gene sets (HumanPSD(TM)) (workflow) (16:34, 12 March 2019)
- Analyze SNP list (TRANSFAC(R)) (workflow) (16:34, 12 March 2019)
- Analyze any DNA sequence for site enrichment (TRANSFAC(R)) (workflow) (16:34, 12 March 2019)
- Analyze promoters (TRANSFAC(R)) (workflow) (16:34, 12 March 2019)
- Mapping to ontologies for multiple gene sets (HumanPSD(TM)) (workflow) (16:34, 12 March 2019)
- ChIP-Seq - Identify and classify target genes (TRANSPATH(R)) (workflow) (16:35, 12 March 2019)
- Find master regulators in mutated network (TRANSPATH(R)) (workflow) (16:35, 12 March 2019)
- Mapping to ontologies (TRANSPATH(R)) (workflow) (16:35, 12 March 2019)
- Upstream analysis with feedback loop (TRANSFAC(R) and TRANSPATH(R)) (workflow) (16:35, 12 March 2019)
- Biouml.plugins.bkl (plugin) (16:35, 12 March 2019)
- Ru.biosoft.jobcontrol (plugin) (16:35, 12 March 2019)
- Biouml.plugins.genomeenhancer (plugin) (16:35, 12 March 2019)
- Ru.biosoft.exception (plugin) (16:35, 12 March 2019)
- Biouml.plugins.mirbase (plugin) (16:35, 12 March 2019)
- Biouml.plugins.reactome (plugin) (16:35, 12 March 2019)
- Biouml.plugins.bindingregions (plugin) (16:35, 12 March 2019)
- Ru.biosoft.bsa (plugin) (16:35, 12 March 2019)
- Biouml.plugins.gtrd (plugin) (16:35, 12 March 2019)
- Biouml.plugins.keynodes (plugin) (16:35, 12 March 2019)
- Ru.biosoft.analysis (plugin) (16:35, 12 March 2019)
- Biouml.plugins.pathfinder (plugin) (16:35, 12 March 2019)
- Biouml.plugins.enrichment (plugin) (16:35, 12 March 2019)
- Biouml.plugins.pharm (plugin) (16:35, 12 March 2019)
- Biouml.plugins.illumina (plugin) (16:35, 12 March 2019)
- Biouml.plugins.transpath (plugin) (16:35, 12 March 2019)
- Com.developmentontheedge.beans (plugin) (16:35, 12 March 2019)
- Biouml.plugins.affymetrix (plugin) (16:35, 12 March 2019)
- Biouml.plugins.ensembl (plugin) (16:35, 12 March 2019)
- Biouml.plugins.ccsignature (plugin) (16:35, 12 March 2019)
- Biouml.plugins.mirprom (plugin) (16:35, 12 March 2019)
- Biouml.plugins.riboseq (plugin) (16:35, 12 March 2019)
- Biouml.plugins.cma (plugin) (16:35, 12 March 2019)
- Biouml.plugins.machinelearning (plugin) (16:36, 12 March 2019)
- Biouml.plugins.cytoscape (plugin) (16:36, 12 March 2019)
- Diagram type (17:41, 12 March 2019)
- Expression mapping (12:14, 13 March 2019)
- SBGN examples (12:57, 13 March 2019)
- Оptimization document (14:20, 14 March 2019)
- Optimization document (15:03, 14 March 2019)
- Fastq mcf (17:35, 25 March 2019)
- Fastx clip (19:05, 25 March 2019)
- SPAdes (19:53, 25 March 2019)
- New BioStore (11:04, 27 March 2019)
- SPAdes stats (14:24, 27 March 2019)
- Filter SPAdes output (14:24, 27 March 2019)
- QUAST (19:49, 27 March 2019)
- RAGOUT (19:11, 4 April 2019)
- Site prediction (22:33, 2 May 2019)
- ChIP-seq Analysis (15:52, 3 May 2019)
- Server ICT (16:32, 7 May 2019)
- GTRD (14:13, 22 October 2019)
- GTRD statistics (12:10, 8 November 2019)
- GTRD comparison (12:45, 8 November 2019)
- Contributors (14:33, 27 November 2019)
- Headless BioUML (12:26, 27 December 2019)
- BioUML team (15:23, 20 January 2020)
- Westerhoff and Kolodkin 2020 COVID19 model (11:31, 17 April 2020)
- Danon et al. Covid-19 transmission in England (12:39, 17 April 2020)
- BioUML wiki (17:25, 5 August 2020)
- Create database from diagram (analysis) (18:14, 9 December 2020)
- Check quotas (analysis) (18:14, 9 December 2020)
- Import HOCOMOCO (analysis) (18:14, 9 December 2020)
- Import ensembl homology (analysis) (18:14, 9 December 2020)
- Export element (analysis) (18:14, 9 December 2020)
- Generate dynamic model (analysis) (18:14, 9 December 2020)
- Convert tracks to VCF (analysis) (18:14, 9 December 2020)
- Install ExPASy (analysis) (18:14, 9 December 2020)
- Install Reactome (analysis) (18:14, 9 December 2020)
- Rebuild search indexes (analysis) (18:14, 9 December 2020)
- Install HumanPSD(TM) database (analysis) (18:14, 9 December 2020)
- Install TRANSPATH(R) database (analysis) (18:14, 9 December 2020)
- Analyze miRNA target enrichment (analysis) (18:14, 9 December 2020)
- Create matrix logo (analysis) (18:14, 9 December 2020)
- Create profile from matrix library (analysis) (18:14, 9 December 2020)
- Get miRNA targets (analysis) (18:14, 9 December 2020)
- Analysis of Binding Regions (analysis) (18:14, 9 December 2020)
- MSAT (analysis) (18:14, 9 December 2020)
- Analysis of Cis-Regulatory Modules (analysis) (18:14, 9 December 2020)
- Search for enriched TFBSs (genes) (analysis) (18:14, 9 December 2020)
- Search for enriched TFBSs (tracks) (analysis) (18:14, 9 December 2020)
- MEALR (tracks) (analysis) (18:14, 9 December 2020)
- Cistrom construction (analysis) (18:14, 9 December 2020)
- GTRD analysis (18:14, 9 December 2020)
- GTRD analysis advanced (analysis) (18:14, 9 December 2020)
- Fantom analysis (18:14, 9 December 2020)
- RNA-Seq analysis (18:14, 9 December 2020)
- ChIP-seq peak profile (analysis) (18:14, 9 December 2020)
- Run MACS 1.3.7 on ChiP-Seq (analysis) (18:14, 9 December 2020)
- Run MACS 1.4.0 on ChiP-Seq (analysis) (18:14, 9 December 2020)
- Report generator for quality control analysis (18:14, 9 December 2020)
- ChIP-seq Quality control analysis (18:14, 9 December 2020)
- Quality control analysis (18:14, 9 December 2020)
- Apply CMA model to tracks (analysis) (18:14, 9 December 2020)
- Add genes from CMA (analysis) (18:14, 9 December 2020)
- Construct composite modules (analysis) (18:14, 9 December 2020)
- Construct composite modules on track (correlation) (analysis) (18:14, 9 December 2020)
- Construct composite modules on tracks (analysis) (18:14, 9 December 2020)
- Composite module to proteins (analysis) (18:14, 9 December 2020)
- CMA Result Statistic (analysis) (18:14, 9 December 2020)
- Continue CMA (analysis) (18:14, 9 December 2020)
- Find miRNA feed forward loops with CMA (analysis) (18:14, 9 December 2020)
- Recalculate composite module score on new track (analysis) (18:14, 9 December 2020)
- Reduce CMA results (analysis) (18:14, 9 December 2020)
- Construct composite modules on tracks (without site search) (analysis) (18:14, 9 December 2020)
- Construct composite modules on tracks with keynodes (analysis) (18:14, 9 December 2020)
- Construct composite modules with keynodes (analysis) (18:14, 9 December 2020)
- Create tissue-specific promoter track (analysis) (18:14, 9 December 2020)
- Create transcript region track (analysis) (18:14, 9 December 2020)
- Import from BC Platform (analysis) (18:14, 9 December 2020)
- Create random track (analysis) (18:14, 9 December 2020)
- Normalization quality plots (analysis) (18:14, 9 December 2020)
- Intersect tables (analysis) (18:14, 9 December 2020)
- Intersect tracks (analysis) (18:14, 9 December 2020)
- Import from TranSMART (analysis) (18:14, 9 December 2020)
- Normalize Affymetrix experiment and control (analysis) (18:14, 9 December 2020)
- Normalize Agilent experiment and control (analysis) (18:14, 9 December 2020)
- Outer join (analysis) (18:14, 9 December 2020)
- Normalize Illumina experiment and control (analysis) (18:14, 9 December 2020)
- MiRNA feed forward loops (analysis) (18:14, 9 December 2020)
- Apply events (analysis) (18:14, 9 December 2020)
- Key Node Sensitivity Analysis (18:14, 9 December 2020)
- Building Flux Balance DataTable (analysis) (18:14, 9 December 2020)
- Algebraic steady state (analysis) (18:14, 9 December 2020)
- Flux Balance Constraint (analysis) (18:14, 9 December 2020)
- Mass Conservation Analysis (18:14, 9 December 2020)
- Parameter identifiability (table) (analysis) (18:14, 9 December 2020)
- Metabolic Control Analysis (18:14, 9 December 2020)
- Quasi-Steady-State Analysis (18:14, 9 December 2020)
- Model analysis (18:14, 9 December 2020)
- Parameter identifiability (optimization) (analysis) (18:14, 9 December 2020)
- Reactions Analysis (18:14, 9 December 2020)
- Steady State (analysis) (18:14, 9 December 2020)
- Sensitivity Analysis (18:14, 9 December 2020)
- Stoichiometric Matrix (analysis) (18:14, 9 December 2020)
- Simulation analysis (18:14, 9 December 2020)
- Score based FBC table builder (analysis) (18:14, 9 December 2020)
- GTEX Mutation effect on sites (analysis) (18:14, 9 December 2020)
- Mutation effect on sites advanced (analysis) (18:14, 9 December 2020)
- Filtering experiments by cell types (analysis) (18:14, 9 December 2020)
- Open per TF view (analysis) (18:14, 9 December 2020)
- Open tracks for all TF (analysis) (18:14, 9 December 2020)
- Site Size Filtering (analysis) (18:14, 9 December 2020)
- Search binding sites (analysis) (18:14, 9 December 2020)
- Search regulated genes (analysis) (18:14, 9 December 2020)
- AUC Estimation For meta-cluster track (analysis) (18:14, 9 December 2020)
- Open regulated genes table (analysis) (18:14, 9 December 2020)
- Coverage Profiles Cutoff (analysis) (18:14, 9 December 2020)
- ChromatinInfo table creation (analysis) (18:14, 9 December 2020)
- Create per TF flat files (analysis) (18:14, 9 December 2020)
- Compare Experiments (analysis) (18:14, 9 December 2020)
- Create flat files (analysis) (18:14, 9 December 2020)
- DNase-seq Group and Profile Generation (Previous version) (analysis) (18:14, 9 December 2020)
- DNase-seq Group and Profile Generation (analysis) (18:14, 9 December 2020)
- Export master track (analysis) (18:14, 9 December 2020)
- Export metadata json (analysis) (18:14, 9 December 2020)
- Encode quality metrics estimation (analysis) (18:14, 9 December 2020)
- Merge peak callers (analysis) (18:14, 9 December 2020)
- Merge peaks (analysis) (18:14, 9 December 2020)
- Make meta tracks (analysis) (18:14, 9 December 2020)
- Export per cell clusters (analysis) (18:14, 9 December 2020)
- Find target genes (analysis) (18:14, 9 December 2020)
- Join GTRD Tracks (analysis) (18:14, 9 December 2020)
- Gene features (analysis) (18:14, 9 December 2020)
- Join GTRD clusters (analysis) (18:14, 9 December 2020)
- Quality control metrics (analysis) (18:14, 9 December 2020)
- Prepare Search by regulation (analysis) (18:14, 9 December 2020)
- Prepare cluster to exp table (analysis) (18:14, 9 December 2020)
- Prepare finished tables (analysis) (18:14, 9 December 2020)
- Prepare target genes by expression (analysis) (18:14, 9 December 2020)
- Profiles Statistics (analysis) (18:14, 9 December 2020)
- Site Profile Filtering (analysis) (18:14, 9 December 2020)
- Sites Motifs Analysis (18:14, 9 December 2020)
- Sites Open Chromatin Statistics (analysis) (18:14, 9 December 2020)
- Sites Open Chromatin Statistics For Folders (analysis) (18:14, 9 December 2020)
- Sites genome location (analysis) (18:14, 9 December 2020)
- Sites genome location for folders (analysis) (18:14, 9 December 2020)
- Update master track (analysis) (18:14, 9 December 2020)
- TrackInfo table creation (analysis) (18:14, 9 December 2020)
- Update pubmed (analysis) (18:14, 9 December 2020)
- TreeMap on Functional classification (analysis) (18:15, 9 December 2020)
- SDE model (analysis) (18:15, 9 December 2020)
- Enrichment analysis (18:15, 9 December 2020)
- Linear Shifted Model (analysis) (18:15, 9 December 2020)
- Functional classification (analysis) (18:15, 9 December 2020)
- Functional classification by diagrams (analysis) (18:15, 9 December 2020)
- Validate Experiments (analysis) (18:15, 9 December 2020)
- Nonlinear Model (analysis) (18:15, 9 December 2020)
- Calculate weighted mutation score (analysis) (18:15, 9 December 2020)
- Create profile from CMA model (analysis) (18:15, 9 December 2020)
- Calculate CMA regulation (analysis) (18:15, 9 December 2020)
- Calculate keynodes ranks (analysis) (18:15, 9 December 2020)
- Fast table filter (analysis) (18:15, 9 December 2020)
- Find regulatory regions (analysis) (18:15, 9 December 2020)
- Generate workflow from annotation diagram (analysis) (18:15, 9 December 2020)
- Find regulatory regions with mutations (analysis) (18:15, 9 December 2020)
- Pharmaceutical Compounds analysis (18:15, 9 December 2020)
- PSD pharmaceutical compounds analysis (18:15, 9 December 2020)
- Split VCF by regulation (analysis) (18:15, 9 December 2020)
- Mutations to genes with weights (analysis) (18:15, 9 December 2020)
- Verify Condition for Table (analysis) (18:15, 9 December 2020)
- Select keynodes with top targets (analysis) (18:15, 9 December 2020)
- Affymetrix CEL file (18:15, 9 December 2020)
- Agilent microarray file (18:15, 9 December 2020)
- BioUML Simulation result (file format) (18:15, 9 December 2020)
- Fastq format (18:15, 9 December 2020)
- Fastq compressed (file format) (18:15, 9 December 2020)
- GWAS format (18:15, 9 December 2020)
- Hemodynamics model (file format) (18:15, 9 December 2020)
- IPython format (18:15, 9 December 2020)
- Illumina microarray file (18:15, 9 December 2020)
- SDF file (18:15, 9 December 2020)
- SEDX archive (file format) (18:15, 9 December 2020)
- TRANSFAC matrices format (18:15, 9 December 2020)
- TRANSFAC profile (file format) (18:15, 9 December 2020)
- Upload from FTP (analysis) (18:15, 9 December 2020)
- Regression analysis advanced (analysis) (18:15, 9 December 2020)
- Site distribution (analysis) (18:15, 9 December 2020)
- Track to gene set (analysis) (18:15, 9 December 2020)
- Transcript set to track (analysis) (18:15, 9 December 2020)
- Classification analysis advanced (analysis) (18:15, 9 December 2020)
- Annotate track with genes (analysis) (18:15, 9 December 2020)
- Gene set to track (analysis) (18:15, 9 December 2020)
- Gene overlap statistics (analysis) (18:15, 9 December 2020)
- Get transcripts track (analysis) (18:15, 9 December 2020)
- MicroRNA aligner (analysis) (18:15, 9 December 2020)
- Create miRNA promoters (analysis) (18:15, 9 December 2020)
- MicroRNA finder (analysis) (18:15, 9 December 2020)
- Affymetrix normalization (analysis) (18:15, 9 December 2020)
- Stem loop predictor (analysis) (18:15, 9 December 2020)
- Illumina normalization (analysis) (18:15, 9 December 2020)
- Agilent normalization (analysis) (18:15, 9 December 2020)
- Convert diagram to Transpath (analysis) (18:15, 9 December 2020)
- Cluster by path (analysis) (18:15, 9 December 2020)
- Convert diagram to pairs (analysis) (18:15, 9 December 2020)
- Cluster by shortest path (analysis) (18:15, 9 December 2020)
- Effector search (analysis) (18:15, 9 December 2020)
- Diagram to user hub collection (analysis) (18:15, 9 December 2020)
- Match genes and metabolites (analysis) (18:15, 9 December 2020)
- Infer network (analysis) (18:15, 9 December 2020)
- Enhance Score (analysis) (18:15, 9 December 2020)
- Compute profile thresholds (analysis) (18:15, 9 December 2020)
- ChIPHorde (analysis) (18:15, 9 December 2020)
- Construct IPS CisModule (analysis) (18:15, 9 December 2020)
- ChIPMunk (analysis) (18:15, 9 December 2020)
- Create IPS model (analysis) (18:15, 9 December 2020)
- Compare site models (analysis) (18:15, 9 December 2020)
- IPS motif discovery (analysis) (18:15, 9 December 2020)
- Heterozygous site caller (analysis) (18:15, 9 December 2020)
- Create weight matrix model (analysis) (18:15, 9 December 2020)
- DiChIPHorde (analysis) (18:15, 9 December 2020)
- DiChIPMunk (analysis) (18:15, 9 December 2020)
- Motif quality analysis (18:15, 9 December 2020)
- Compare TFBS mutations (analysis) (18:15, 9 December 2020)
- Create Match model (analysis) (18:15, 9 December 2020)
- Mutation effect on sites (analysis) (18:15, 9 December 2020)
- Merge track statistics (analysis) (18:15, 9 December 2020)
- BAM filter multi-hits (analysis) (18:15, 9 December 2020)
- SNP matching (analysis) (18:15, 9 December 2020)
- Color space to nucleotide (analysis) (18:15, 9 December 2020)
- Perfectosape (analysis) (18:15, 9 December 2020)
- Double encode SOLiD (analysis) (18:15, 9 December 2020)
- Mutation effect (analysis) (18:15, 9 December 2020)
- Convert table to track (analysis) (18:15, 9 December 2020)
- Compute coverage by window (analysis) (18:15, 9 December 2020)
- Track statistics (analysis) (18:15, 9 December 2020)
- Cluster track (analysis) (18:15, 9 December 2020)
- Preprocess raw reads (analysis) (18:15, 9 December 2020)
- Filter track by condition (analysis) (18:15, 9 December 2020)
- Join tracks (analysis) (18:15, 9 December 2020)
- Compute coverage profile (analysis) (18:15, 9 December 2020)
- Filter one track by another (analysis) (18:15, 9 December 2020)
- Convert table to VCF track (analysis) (18:15, 9 December 2020)
- Track correlation (analysis) (18:15, 9 December 2020)
- Venn diagrams (analysis) (18:15, 9 December 2020)
- Remove overlapping sites (analysis) (18:15, 9 December 2020)
- Plot bar chart (analysis) (18:15, 9 December 2020)
- Process track with sites (analysis) (18:15, 9 December 2020)
- Reduce track (analysis) (18:15, 9 December 2020)
- Plot pie chart (analysis) (18:15, 9 December 2020)
- Plot scatter chart (analysis) (18:15, 9 December 2020)
- Parameter fitting (analysis) (18:15, 9 December 2020)
- Population generation (analysis) (18:15, 9 December 2020)
- Sample population (analysis) (18:15, 9 December 2020)
- Prepare GTF annotation (analysis) (18:15, 9 December 2020)
- Treatment Simulation (analysis) (18:15, 9 December 2020)
- Count reads in transcripts (analysis) (18:15, 9 December 2020)
- ComputeTranscriptProfile (analysis) (18:15, 9 December 2020)
- Read counter (analysis) (18:15, 9 December 2020)
- Convert genomic BAM to transcriptomic (analysis) (18:15, 9 December 2020)
- BuildASiteOffsetTable (analysis) (18:15, 9 December 2020)
- BuildProfileModel (analysis) (18:15, 9 December 2020)
- Estimate read density (analysis) (18:15, 9 December 2020)
- BAM filter strand specific (analysis) (18:15, 9 December 2020)
- ComputeProfileSums (analysis) (18:15, 9 December 2020)
- Download model (analysis) (18:15, 9 December 2020)
- PredictStartSites (analysis) (18:15, 9 December 2020)
- Make GTF for riboseq alignment (analysis) (18:15, 9 December 2020)
- Apply state to diagram (analysis) (18:15, 9 December 2020)
- Isoform TE (analysis) (18:15, 9 December 2020)
- Change diagram (analysis) (18:15, 9 December 2020)
- Transcript structure analysis (18:15, 9 December 2020)
- Extract ribosomal RNA (analysis) (18:15, 9 December 2020)
- Create state (analysis) (18:15, 9 December 2020)
- Large sequence minimal unique length (analysis) (18:15, 9 December 2020)
- Set initial values from simulation result (analysis) (18:15, 9 December 2020)
- Merge simulation results (analysis) (18:15, 9 December 2020)
- Plot2D (analysis) (18:15, 9 December 2020)
- Report (analysis) (18:15, 9 December 2020)
- Find unmappable regions (analysis) (18:15, 9 December 2020)
- Sequence mappability (analysis) (18:15, 9 December 2020)
- Mappability histogram (analysis) (18:15, 9 December 2020)
- Cluster analysis by K-means (analysis) (18:15, 9 December 2020)
- CRC Analysis (18:15, 9 December 2020)
- CR cluster selector (analysis) (18:15, 9 December 2020)
- Sequence minimal unique length (analysis) (18:15, 9 December 2020)
- Transcriptome mappability (analysis) (18:15, 9 December 2020)
- Transcriptome minimal unique length (analysis) (18:15, 9 December 2020)
- Fold-Change calculation (analysis) (18:15, 9 December 2020)
- Differential expression with DESeq (analysis) (18:15, 9 December 2020)
- EBarrays (analysis) (18:15, 9 December 2020)
- Compare analysis results (analysis) (18:15, 9 December 2020)
- Heatmap (analysis) (18:15, 9 December 2020)
- GlycanR (analysis) (18:15, 9 December 2020)
- Guided linear model analysis (18:15, 9 December 2020)
- Table imputation (analysis) (18:15, 9 December 2020)
- Limma (analysis) (18:15, 9 December 2020)
- Sign test (analysis) (18:15, 9 December 2020)
- Quantile normalization (analysis) (18:15, 9 December 2020)
- PCA (analysis) (18:15, 9 December 2020)
- LRPath (analysis) (18:15, 9 December 2020)
- Variance filter (analysis) (18:15, 9 December 2020)
- Create profile from gene table (analysis) (18:15, 9 December 2020)
- Change profile cutoffs (analysis) (18:15, 9 December 2020)
- Convert site models to proteins (analysis) (18:15, 9 December 2020)
- Create profile from site model table (analysis) (18:15, 9 December 2020)
- Convert site search summary (analysis) (18:15, 9 December 2020)
- Site search summary (analysis) (18:15, 9 December 2020)
- Annotate table (analysis) (18:15, 9 December 2020)
- Site search on gene set (analysis) (18:15, 9 December 2020)
- Site search on track (analysis) (18:15, 9 December 2020)
- Site search report (analysis) (18:15, 9 December 2020)
- Site search result optimization (analysis) (18:15, 9 December 2020)
- Add calculated column (analysis) (18:15, 9 December 2020)
- Filter table (analysis) (18:15, 9 December 2020)
- Convert table via homology (analysis) (18:15, 9 December 2020)
- Group table rows (analysis) (18:15, 9 December 2020)
- TF binding sites prediction in genome or track (analysis) (18:15, 9 December 2020)
- Filter duplicate rows (analysis) (18:15, 9 December 2020)
- Convert table (analysis) (18:15, 9 December 2020)
- Join several tables (analysis) (18:15, 9 December 2020)
- Select table columns (analysis) (18:15, 9 December 2020)
- Select top rows (analysis) (18:15, 9 December 2020)
- Join two tables (analysis) (18:15, 9 December 2020)
- Merge table columns (analysis) (18:15, 9 December 2020)
- Transform table (analysis) (18:15, 9 December 2020)
- ArticleComparator (analysis) (18:15, 9 December 2020)
- Super annotate table (analysis) (18:15, 9 December 2020)
- Select random rows (analysis) (18:15, 9 December 2020)
- SelectionTrustClusters (analysis) (18:15, 9 December 2020)
- Bowtie (analysis) (18:15, 9 December 2020)
- SVM (analysis) (18:15, 9 December 2020)
- RiboSeqExp (analysis) (18:15, 9 December 2020)
- Annotate diagram (analysis) (18:15, 9 December 2020)
- RiboseqArticleResult (analysis) (18:15, 9 December 2020)
- ArticleTrackCreator (analysis) (18:15, 9 December 2020)
- FinderArticlePoints (analysis) (18:15, 9 December 2020)
- CoverageCheker (analysis) (18:15, 9 December 2020)
- Chromosome enrichment (analysis) (18:15, 9 December 2020)
- Blast alignment coverage (analysis) (18:15, 9 December 2020)
- Illumina metylation probes to track (analysis) (18:15, 9 December 2020)
- Map Transfac sites to genome (analysis) (18:15, 9 December 2020)
- PASS analysis (18:15, 9 December 2020)
- Extract RNA length (analysis) (18:15, 9 December 2020)
- Diagram graph compare analysis (18:15, 9 December 2020)
- GC island finder (analysis) (18:15, 9 December 2020)
- Generate Table From JSON (analysis) (18:15, 9 December 2020)
- Share molecules (analysis) (18:15, 9 December 2020)
- Run analysis (18:15, 9 December 2020)
- SEEK Synchronize (analysis) (18:15, 9 December 2020)
- Remove unobservable molecules (analysis) (18:15, 9 December 2020)
- Recon transformer (analysis) (18:15, 9 December 2020)
- Split fasta (analysis) (18:15, 9 December 2020)
- Site counts in repeats (analysis) (18:15, 9 December 2020)
- Copy data element (analysis) (18:15, 9 December 2020)
- Copy folder (analysis) (18:15, 9 December 2020)
- Select files from folder (analysis) (18:15, 9 December 2020)
- Stub process file (analysis) (18:15, 9 December 2020)
- Sort SQL track (analysis) (18:15, 9 December 2020)
- Create folder (analysis) (18:15, 9 December 2020)
- Remote application client (analysis) (18:15, 9 December 2020)
- Run a Workflow as Analysis (18:15, 9 December 2020)
- Check Workflow consistency (analysis) (18:15, 9 December 2020)
- Covid-19 Differential Delay Model (15:57, 30 June 2021)
- COVID-19 parameters for Lung (14:56, 19 July 2021)
- COVID-19 parameters for Nasopharynx (15:00, 19 July 2021)
- COVID-19 parameters for Intestine (15:09, 19 July 2021)
- Kinetic parameters for COVID-19 models (12:13, 20 July 2021)
- Covid 19 parameters (12:17, 20 July 2021)
- Steady State Examples (18:09, 19 August 2021)
- Optimization problem (13:30, 3 September 2021)
- BioUML workbench installation (11:50, 22 October 2021)
- Genome Browser iframe (08:55, 4 February 2022)
- Genome Browser json (09:05, 4 February 2022)
- Combined track (10:33, 4 February 2022)
- 3D viewer (11:40, 4 February 2022)
- BPMN (12:56, 4 February 2022)
- CWL (18:22, 4 February 2022)
- SBGN extension (20:02, 4 February 2022)
- Docker meta (12:56, 9 February 2022)
- Galaxy (11:25, 10 February 2022)
- Galaxy admin (11:31, 10 February 2022)
- Tools Comparison (23:07, 28 February 2022)
- BioUML overview (13:17, 9 March 2022)
- Systems biology - model import 02 (12:45, 15 March 2022)
- Sensitivity analysis example (10:48, 16 March 2022)
- Metabolic control analysis example (10:48, 16 March 2022)
- Quasi-steady-state analysis example (10:48, 16 March 2022)
- Systems biology - model layout (11:44, 16 March 2022)
