Filter SPAdes output

From BioUML platform
Jump to: navigation, search

What it does

Using the output of SPAdes (a fasta and a stats file, either from contigs or scaffolds), it filters the fasta files, discarding all sequences that are under a given length or under a given coverage.

Typically, this is used to discard short contigs, or contaminations. To display a coverage vs. length plot, use the SPAdes stats tool in the same package.

Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox