Ru.biosoft.analysis (plugin)

ID

ru.biosoft.analysis

Name

Common methods of data analysis plug-in

Provider

Institute of Systems Biology

Version

0.9.10

Extension points

Extension points defined in this plugin:

• ru.biosoft.analysis.method

Analysis methods

Analysis methods defined in this plugin:

• Affymetrix normalization
• Agilent normalization
• Annotate diagram
• Annotate table
• CR cluster selector
• CRC Analysis
• Check quotas
• Clean up SQL database
• Cluster analysis by K-means
• Convert table
• Copy data element
• Copy folder
• Correlation Analysis
• Create folder
• Diagram graph compare analysis
• Differential expression with DESeq
• Export element
• Extend network
• Filter duplicate rows
• Filter table
• Fold-Change calculation
• Group table rows
• Hypergeometric analysis
• Illumina normalization
• Join diagrams
• Join several tables
• Join table
• Merge table columns
• Meta analysis
• Plot bar chart
• Plot pie chart
• Plot scatter chart
• Polynomial Regression analysis
• Quantile normalization
• Remove unobservable molecules
• Select random rows
• Select table columns
• Select top rows
• Share molecules
• Sign test
• Super annotate table
• Table imputation
• Transform table
• Up and Down Identification
• Venn diagrams

Host objects

JavaScript host objects defined in this plugin:

• microarray
• normalize
• transform

Reference types

Reference types defined in this plugin:

• Categories
• Genes
• Pathways
• Probes
• Proteins
• Substances
• Transcripts