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- Construct composite modules (analysis) (12,746 views)
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- Acknowledgements (11,242 views)
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- Motif quality analysis (10,971 views)
- Fasta format (10,785 views)
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- Effector search (analysis) (10,224 views)
- Adaptive simulated annealing (analysis) (10,183 views)
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- Defines.js (10,027 views)
- Regulator search (analysis) (9,925 views)
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- Search tools (9,487 views)
- Reactions Analysis (9,428 views)
- Galaxy cloud (9,355 views)
- Gene Ontology (9,355 views)
- GenBank format (9,321 views)
- Copy folder (analysis) (9,308 views)
- Simulation analysis (9,277 views)
- DiChIPHorde (analysis) (9,255 views)
- Composite module to proteins (analysis) (9,242 views)
- Site search on track (analysis) (9,241 views)
- Install TRANSFAC(R) database (analysis) (9,182 views)
- Filter table (analysis) (9,156 views)
- GLBSOLVE (analysis) (9,086 views)
- SIF (file format) (9,078 views)
- Diagram (element type) (9,053 views)
- Geneways (9,045 views)
- Sensitivity Analysis (8,973 views)
- Bowtie (analysis) (8,955 views)
- DiChIPMunk (analysis) (8,944 views)
- Ru.biosoft.access (plugin) (8,921 views)
- TRRD (8,911 views)
- Gene features (analysis) (8,902 views)
- Compare site models (analysis) (8,850 views)
- Compare Experiments (analysis) (8,844 views)
- Breakdancer output (file format) (8,801 views)
- Using R in BioUML (8,792 views)
- Apply state to diagram (analysis) (8,768 views)
- Affymetrix normalization (analysis) (8,681 views)
- Wiggle format (8,681 views)
- BioNetGen language format (8,603 views)
- Gene Transfer Format (8,589 views)
- Virtual rat (8,552 views)
- Repository (8,547 views)
- Annotate track with genes (analysis) (8,525 views)
- Modular model of the human CVS v.1 (8,473 views)
- Descrete events (8,472 views)
- Servers (8,412 views)
- Image file (8,411 views)
- SBML (file format) (8,401 views)
- Chromosome enrichment (analysis) (8,382 views)
- Add expression values (analysis) (8,377 views)
- Preprocess raw reads (analysis) (8,377 views)
- CNVnator genotype output (file format) (8,344 views)
- Using Galaxy in BioUML (8,330 views)
- Gene set to track (analysis) (8,264 views)
- Convert table to track (analysis) (8,244 views)
- ChIP-seq peak profile (analysis) (8,219 views)
- Create DAS track (analysis) (8,218 views)
- Create IPS model (analysis) (8,211 views)
- Polynomial Regression analysis (8,184 views)
- Annotate table (analysis) (8,180 views)
- Tools Comparison 2022 (8,162 views)
- Cluster analysis by K-means (analysis) (8,149 views)
- Cluster by shortest path (analysis) (8,106 views)
- Ru.biosoft.proteome (plugin) (8,102 views)
- Read counter (analysis) (8,098 views)
- Convert table (analysis) (8,081 views)
- Building Flux Balance DataTable (analysis) (8,059 views)
- GeneXplain GmbH (8,052 views)
- Ensembl installation (8,005 views)
- HTML file (7,986 views)
- Ru.biosoft.analysis (plugin) (7,946 views)
- Genome coverage (analysis) (7,907 views)
- Text file (7,881 views)
- Change profile cutoffs (analysis) (7,867 views)
- Join tracks (analysis) (7,842 views)
- Export element (analysis) (7,840 views)
- Evolution strategy (SRES) (analysis) (7,801 views)
- General Feature Format (7,787 views)
- Cellular genetic algorithm (analysis) (7,781 views)
- MicroRNA aligner (analysis) (7,767 views)
- Analysis of Cis-Regulatory Modules (analysis) (7,739 views)
- Filter one track by another (analysis) (7,732 views)
- Linear Shifted Model (analysis) (7,717 views)
- Process track with sites (analysis) (7,667 views)
- Create folder (analysis) (7,659 views)
- Interval format (7,650 views)
- Grid layout (7,643 views)
- Institute of Systems Biology (7,631 views)
- Particle swarm optimization (analysis) (7,609 views)
- Biouml.plugins.ensembl (plugin) (7,585 views)
- Install TRANSPATH(R) database (analysis) (7,558 views)
- Convert site models to proteins (analysis) (7,477 views)
- Construct IPS CisModule (analysis) (7,468 views)
- Extend network (analysis) (7,466 views)
- Biouml.plugins.cma (plugin) (7,464 views)
- Disease - MeSH (7,412 views)
- Biouml.plugins.bionetgen (plugin) (7,377 views)
- Convert table via homology (analysis) (7,357 views)
- Create profile from gene table (analysis) (7,357 views)
- Join several tables (analysis) (7,349 views)
- Filter track by condition (analysis) (7,339 views)
- GO installation (7,338 views)
- Biouml.workbench (plugin) (7,317 views)
- Gene overlap statistics (analysis) (7,280 views)
- Heterozygous site caller (analysis) (7,255 views)
- SED-ML file (7,253 views)
- Create Match model (analysis) (7,210 views)
- Join table (analysis) (7,186 views)
- Generic file (7,154 views)
- Nonlinear Model (analysis) (7,138 views)
- Ru.biosoft.table (plugin) (7,098 views)
- Diagram view part (extension point) (7,066 views)
- Create weight matrix model (analysis) (7,010 views)
- VCF format (6,962 views)
- Biouml.plugins.bindingregions (plugin) (6,940 views)
- SDE model (analysis) (6,919 views)
- Steady State (analysis) (6,879 views)
- Gene expression prediction (6,872 views)
- HumanSim (6,818 views)
- Merge track statistics (analysis) (6,807 views)
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- SAM or BAM alignment file (6,784 views)
- Orthogonal layout (6,753 views)
- Biouml.plugins.cellml (plugin) (6,738 views)
- Fastq format (6,730 views)
- Matching BioHub (6,712 views)
- SNP matching (analysis) (6,583 views)
- Save hits (analysis) (6,581 views)
- Biouml.plugins.chipmunk (plugin) (6,580 views)
- IPS motif discovery (analysis) (6,562 views)
- Venn diagrams (analysis) (6,516 views)
- Site distribution (analysis) (6,498 views)
- Illumina normalization (analysis) (6,473 views)
- Genes - GenBank (6,459 views)
- 1-dimensional arterial tree model (6,448 views)
- Ru.biosoft.galaxy (plugin) (6,438 views)
- Modular model of the human CVS v.2 (6,419 views)
- Mutation effect (analysis) (6,410 views)
- Ru.biosoft.server (plugin) (6,394 views)
- Analyze promoters (TRANSFAC(R)) (workflow) (6,305 views)
- Image (element type) (6,278 views)
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- Script viewpart (6,220 views)
- Ru.biosoft.workbench (plugin) (6,218 views)
- Biouml.plugins.creasemarks (plugin) (6,214 views)
- Fold-Change calculation (analysis) (6,194 views)
- Biouml.plugins.das (plugin) (6,167 views)
- Run MACS 1.3.7 on ChiP-Seq (analysis) (6,148 views)
- CloudBioLinux (6,144 views)
- Genes - Ensembl (6,130 views)
- Save network (analysis) (6,119 views)
- JVODE (6,118 views)
- Biouml.plugins.enrichment (plugin) (6,104 views)
- SDF file (6,103 views)
- Join diagrams (analysis) (6,097 views)
- Upload from FTP (analysis) (6,074 views)
- Method (extension point) (6,062 views)
- Collaborative diagram editing (6,014 views)
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- Biouml.plugins.fbc (plugin) (5,950 views)
- Biouml.plugins.transfac (plugin) (5,922 views)
- Biouml.plugins.sbml (plugin) (5,910 views)
- Proteins - IPI (5,864 views)
- Genes - Entrez (5,855 views)
- TRANSFAC matrices format (5,855 views)
- Biouml.plugins.modelreduction (plugin) (5,851 views)
- SISSRs output (file format) (5,815 views)
- Biouml.plugins.reactome (plugin) (5,812 views)
- Track statistics (analysis) (5,804 views)
- Host object (extension point) (5,791 views)
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- Map to Transpath (analysis) (5,787 views)
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- GinSim (file format) (5,709 views)
- Ru.biosoft.graph (plugin) (5,702 views)
- Biouml.plugins.bowtie (plugin) (5,656 views)
- to user communication (5,619 views)
- Pindel output (file format) (5,596 views)
- Ru.biosoft.plugins.jri (plugin) (5,592 views)
- Fastq mcf (5,541 views)
- General control panel (5,523 views)
- Binding regions summary (analysis) (5,520 views)
- CellML (file format) (5,514 views)
- Export (extension point) (5,494 views)
- Proteins - UniProt (5,486 views)
- Ru.biosoft.analysis.optimization (plugin) (5,459 views)
- Tabular (file format) (5,443 views)
- Biouml.plugins.keynodes (plugin) (5,404 views)
- Biouml.plugins.chemoinformatics (plugin) (5,391 views)
- Biouml.plugins.obo (plugin) (5,344 views)
- Stoichiometric Matrix (analysis) (5,344 views)
- Tools Comparison (5,339 views)
- Site search on gene set (analysis) (5,331 views)
- Visualize results (analysis) (5,328 views)
- Create matrix by mixture of normal components (analysis) (5,320 views)
- Biouml.plugins.sbw (plugin) (5,317 views)
- Biouml.plugins.optimization (plugin) (5,273 views)
- ChIP-Seq characteristics distribution (analysis) (5,246 views)
- Run MACS 1.4.0 on ChiP-Seq (analysis) (5,228 views)
- Reference type (5,224 views)
- Parameter identifiability example (5,217 views)
- Site counts in repeats (analysis) (5,202 views)
- Biouml.plugins.transpath (plugin) (5,191 views)
- Databases installation (5,190 views)
- Euler (5,184 views)
- Document pane (5,182 views)
- Site search result optimization (analysis) (5,130 views)
- SBML(CellDesigner) (file format) (5,123 views)
- Biouml.plugins.sedml (plugin) (5,121 views)
- Common class (extension point) (5,114 views)
- Genome browser (5,109 views)
- Classification hub (5,106 views)
- Count olig frequencies (analysis) (5,061 views)
- Track to gene set (analysis) (5,033 views)
- Categories - GTRD (5,032 views)
- Ru.biosoft.server.servlets (plugin) (4,983 views)
- Autosome.Ru (4,961 views)
- Biouml.plugins.simulation (plugin) (4,961 views)
- Reactome (4,948 views)
- Classification analysis (4,945 views)
- Ru.biosoft.templates (plugin) (4,944 views)
- Ru.biosoft.plugins.javascript (plugin) (4,941 views)
- IPS ROC-curves (analysis) (4,927 views)
- Proteins - Ensembl (4,912 views)
- Matrix (element type) (4,911 views)
- Biouml.plugins.sabiork (plugin) (4,910 views)
- Up and Down Identification (analysis) (4,885 views)
- Biouml.plugins.agentmodeling (plugin) (4,881 views)
- Biouml.plugins.geneways (plugin) (4,876 views)
- Biouml.plugins.microarray (plugin) (4,868 views)
- Biouml.plugins.ginsim (plugin) (4,863 views)
- Biouml.plugins.graphml (plugin) (4,858 views)
- Proteins - Reactome (4,852 views)
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- Proteins - RefSeq (4,839 views)
- Transcripts - Ensembl (4,833 views)
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- Mixture of normal components (analysis) (4,739 views)
- Validate Experiments (analysis) (4,738 views)
- Cell type specific TFBS prediction (4,716 views)
- Ru.biosoft.access.search (plugin) (4,716 views)
- TRANSFAC profile (file format) (4,714 views)
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- Table (element type) (4,686 views)
- ChIP-seq peaks - GTRD (4,684 views)
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- ChIP-seq Analysis (4,314 views)
- Proteins - GenBank (4,309 views)
- Text output file generated by R (file format) (4,307 views)
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- File (element type) (4,032 views)
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- Mapping to ontologies for multiple gene sets (workflow) (3,995 views)
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- Server administrator (3,858 views)
- Site models - GTRD (3,854 views)
- Gene set enrichment analysis (Affymetrix probes) (workflow) (3,848 views)
- Tutorials (3,840 views)
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- Track (element type) (3,800 views)
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- Perspective (extension point) (3,755 views)
- Sequence (element type) (3,738 views)
- Analysis of Binding Regions (analysis) (3,727 views)
- Install ExPASy (analysis) (3,721 views)
- Compute differentially expressed genes (Illumina probes) (workflow) (3,707 views)
- Apply CMA model to tracks (analysis) (3,706 views)
- Sensitivity analysis example (3,701 views)
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- ChIP-Seq - Identify composite modules on peaks (TRANSFAC(R)) (workflow) (3,658 views)
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- Data (host object) (3,600 views)
- Matrices - TRANSFAC (3,600 views)
- Quasi-Steady-State Analysis (3,600 views)
- Expression mapping (3,562 views)
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- Product (3,526 views)
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- Text (element type) (3,452 views)
- Reference type (extension point) (3,436 views)
- Antimony (file format) (3,419 views)
- Convert files to tracks (analysis) (3,417 views)
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- Moved class (extension point) (3,396 views)
- Virtual biology (3,395 views)
- Identical best site ROC-curves (analysis) (3,392 views)
- BuildASiteOffsetTable (analysis) (3,373 views)
- Transformer (extension point) (3,370 views)
- Join GTRD Tracks (analysis) (3,368 views)
- Plugin development (3,362 views)
- BuildProfileModel (analysis) (3,356 views)
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- Probes - Affymetrix ST (3,337 views)
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- RADAU V (3,319 views)
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- SEDX archive (file format) (3,276 views)
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- Look and feel (extension point) (3,236 views)
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- Group table rows (analysis) (3,223 views)
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- Profile (element type) (3,184 views)
- Apply events (analysis) (3,182 views)
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- Differential expression with DESeq (analysis) (3,160 views)
- Context item (extension point) (3,153 views)
- Add genes from CMA (analysis) (3,151 views)
- CRISPR Cas9 and specific oligonucleotides (analysis) (3,151 views)
- Matrix comparison (analysis) (3,151 views)
- Structures - PDB (3,137 views)
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- Compute profile thresholds (analysis) (3,012 views)
