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- Wiggle format (16:40, 17 May 2013)
- Matrix library (element type) (16:52, 17 May 2013)
- Matrix (element type) (17:04, 17 May 2013)
- Site model (element type) (17:15, 17 May 2013)
- Profile (element type) (17:23, 17 May 2013)
- Biohub (extension point) (11:17, 20 May 2013)
- BioHub (11:18, 20 May 2013)
- Method description HTML file (10:51, 28 May 2013)
- Upstream analysis (TRANSFAC(R) and GeneWays) (workflow) (13:34, 30 May 2013)
- Upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (13:34, 30 May 2013)
- Folder (element type) (17:40, 30 May 2013)
- Join table (analysis) (11:14, 31 May 2013)
- Extend network (analysis) (11:15, 31 May 2013)
- Map to Transpath (analysis) (11:15, 31 May 2013)
- Join diagrams (analysis) (11:15, 31 May 2013)
- Evolution strategy (SRES) (analysis) (11:15, 31 May 2013)
- Cellular genetic algorithm (analysis) (11:15, 31 May 2013)
- GLBSOLVE (analysis) (11:15, 31 May 2013)
- Particle swarm optimization (analysis) (11:15, 31 May 2013)
- Quadratic Hill-climbing (analysis) (11:15, 31 May 2013)
- Correlation Analysis (11:15, 31 May 2013)
- Hypergeometric analysis (11:15, 31 May 2013)
- Meta analysis (11:15, 31 May 2013)
- Polynomial Regression analysis (11:15, 31 May 2013)
- Up and Down Identification (analysis) (11:15, 31 May 2013)
- Types (extension point) (16:02, 3 June 2013)
- Analyses (extension point) (16:24, 3 June 2013)
- Site models - GTRD (14:40, 4 June 2013)
- Hormone - EndoNet (14:40, 4 June 2013)
- Unspecified (reference type) (14:40, 4 June 2013)
- Cell - EndoNet (14:40, 4 June 2013)
- ChIP-seq peaks - GTRD (14:40, 4 June 2013)
- Proteins - PDB (14:40, 4 June 2013)
- Structures - PDB (14:40, 4 June 2013)
- Isoforms - GTRD (14:40, 4 June 2013)
- Disease - MeSH (14:40, 4 June 2013)
- Perspective (15:47, 4 June 2013)
- General control panel (15:57, 4 June 2013)
- Viewpart (15:57, 4 June 2013)
- SAM or BAM alignment file (17:17, 6 June 2013)
- SISSRs output (file format) (17:17, 6 June 2013)
- Reference type (17:40, 6 June 2013)
- Modular modeling (16:16, 7 June 2013)
- Databases installation (18:05, 11 June 2013)
- Layout (extension point) (15:37, 14 June 2013)
- Research diagram (15:42, 14 June 2013)
- Force directed layout (15:57, 14 June 2013)
- Adaptive simulated annealing (analysis) (16:16, 14 June 2013)
- Install TRANSFAC(R) database (analysis) (18:06, 14 June 2013)
- Genome coverage (analysis) (18:06, 14 June 2013)
- Track coverage (analysis) (18:07, 14 June 2013)
- Create DAS track (analysis) (18:07, 14 June 2013)
- IPS-scores in SNPs (analysis) (13:38, 17 June 2013)
- SNP regions in genome (analysis) (13:38, 17 June 2013)
- About dialog (extension point) (15:02, 17 June 2013)
- Function (extension point) (15:13, 17 June 2013)
- Module type (extension point) (15:29, 17 June 2013)
- Repository pane toolbar (15:34, 17 June 2013)
- Element action (extension point) (15:47, 17 June 2013)
- Repository actions provider (extension point) (16:18, 17 June 2013)
- BioUML user interface (13:09, 19 June 2013)
- Repository (14:40, 19 June 2013)
- Information box (14:49, 19 June 2013)
- Table (element type) (14:57, 19 June 2013)
- Element type (15:12, 19 June 2013)
- Graph search (15:16, 19 June 2013)
- TRRD (16:37, 19 June 2013)
- Transplorer (16:38, 19 June 2013)
- GeneNet (16:38, 19 June 2013)
- Search tools (12:02, 24 June 2013)
- Features (14:53, 25 June 2013)
- Reactome (15:24, 26 June 2013)
- Geneways (15:26, 26 June 2013)
- Table document (16:06, 26 June 2013)
- Sequence (element type) (12:27, 27 June 2013)
- Ensembl (13:15, 27 June 2013)
- Track (element type) (13:29, 27 June 2013)
- Biopath (15:13, 27 June 2013)
- Biomodels (15:14, 27 June 2013)
- Repository pane (15:20, 27 June 2013)
- Genome browser (11:34, 1 July 2013)
- Modular model of the human CVS v.1 (11:37, 1 July 2013)
- Long-term model of the CVS/Renal system (11:37, 1 July 2013)
- Overall circulation model (11:39, 1 July 2013)
- Modular model of the human CVS v.2 (11:40, 1 July 2013)
- 1-dimensional arterial tree model (11:42, 1 July 2013)
- Import (extension point) (12:10, 1 July 2013)
- Gene Ontology (12:27, 1 July 2013)
- Databases (11:13, 2 July 2013)
- Tree-table (element type) (13:30, 2 July 2013)
- Grid layout (13:38, 2 July 2013)
- Orthogonal layout (13:38, 2 July 2013)
- Hierarchical layout (13:39, 2 July 2013)
- Cross cost grid layout (13:39, 2 July 2013)
- MGL (13:42, 2 July 2013)
- Document pane (14:22, 2 July 2013)
- Proteins - GenBank (17:58, 2 July 2013)
- ChIP experiment - GTRD (17:59, 2 July 2013)
- Proteins - NCBI (17:59, 2 July 2013)
- Categories - Gene ontology (18:06, 2 July 2013)
- Categories - ExPASy (18:06, 2 July 2013)
- Pathways (reference type) (18:06, 2 July 2013)
- Pathways - Transpath (18:06, 2 July 2013)
- Categories - GTRD (18:06, 2 July 2013)
- Categories (reference type) (18:06, 2 July 2013)
- Pathways - Reactome (18:06, 2 July 2013)
- Matching BioHub (15:57, 3 July 2013)
- Classification hub (16:13, 3 July 2013)
- Tree-table document (16:46, 3 July 2013)
- Enzymes - KEGG (18:11, 9 July 2013)
- GO installation (16:45, 15 July 2013)
- Enzymes - ExPASy (18:37, 16 July 2013)
- Clean up SQL database (analysis) (18:38, 16 July 2013)
- Galaxy installation (11:31, 30 July 2013)
- Hash parameters (10:42, 2 August 2013)
- Server administrator (11:00, 19 August 2013)
- BioUML server (11:02, 19 August 2013)
- Product (11:04, 19 August 2013)
- Document factory (extension point) (13:35, 26 August 2013)
- Common class (extension point) (10:17, 28 August 2013)
- Plugin development (11:35, 10 September 2013)
- BioUML exceptions (12:24, 11 September 2013)
- Using R in BioUML (17:00, 12 September 2013)
- Visual modeling (17:36, 12 September 2013)
- Method (extension point) (12:19, 13 September 2013)
- BioUML web client (14:01, 13 September 2013)
- Analysis method development (14:06, 13 September 2013)
- Script type (extension point) (14:32, 13 September 2013)
- Query system (extension point) (14:38, 13 September 2013)
- Data collection listener (extension point) (14:42, 13 September 2013)
- Diff manager (extension point) (14:47, 13 September 2013)
- Application log (viewpart) (14:51, 13 September 2013)
- Script viewpart (14:52, 13 September 2013)
- Rbiouml (12:30, 19 September 2013)
- Diagram (element type) (14:17, 8 October 2013)
- Diagram document (16:44, 8 October 2013)
- BioUML (16:43, 9 October 2013)
- to user communication (11:57, 10 October 2013)
- Diagram editing history (15:10, 11 October 2013)
- Project (15:43, 11 October 2013)
- Collaborative diagram editing (14:21, 14 October 2013)
- Hadoop (11:16, 17 November 2013)
- NGS misc (11:19, 17 November 2013)
- KEGG (reference type) (14:27, 18 November 2013)
- Perfectosape (host object) (15:00, 18 November 2013)
- Perspective (extension point) (15:19, 21 November 2013)
- Wizard page (extension point) (15:21, 21 November 2013)
- Workflow (16:54, 3 December 2013)
- CloudMan (20:52, 5 January 2014)
- BioCloudCentral (21:13, 5 January 2014)
- CloudBioLinux (21:53, 5 January 2014)
- BioBlend (21:57, 5 January 2014)
- Galaxy cloud (21:02, 9 January 2014)
- EMBL format (11:20, 13 January 2014)
- Fasta format (11:20, 13 January 2014)
- GenBank format (11:20, 13 January 2014)
- Biohub (host object) (11:20, 13 January 2014)
- DataFilter (host object) (11:20, 13 January 2014)
- Report (host object) (11:20, 13 January 2014)
- Node (host object) (11:20, 13 January 2014)
- PharmML (23:56, 11 February 2014)
- DDMoRe consortium (00:04, 12 February 2014)
- Defines.js (18:23, 5 March 2014)
- Non-Linear Mixed Effects Model (21:35, 14 April 2014)
- Система кровообращения человека (18:19, 30 May 2014)
- N-Glycan biosynthesis (15:21, 6 June 2014)
- Virtual biology (23:07, 21 September 2014)
- Diagram view part (extension point) (17:04, 25 September 2014)
- Virtual rat (23:40, 6 October 2014)
- Glycan structures (12:48, 13 October 2014)
- BioUML web edition (14:12, 1 December 2014)
- Transformer (extension point) (16:04, 11 December 2014)
- Probes - Affymetrix ST (16:15, 11 December 2014)
- Probes - Affymetrix HG-U133+ PM (16:15, 11 December 2014)
- Probes - Agilent Tox Array (16:15, 11 December 2014)
- SNPs in binding regions (analysis) (16:17, 11 December 2014)
- Creasemarks analysis (16:17, 11 December 2014)
- Ftp (host object) (16:18, 11 December 2014)
- SiteAnalysis (host object) (16:18, 11 December 2014)
- ChIP-Seq - Identify TF binding sites on peaks for multiple datasets (TRANSFAC(R)) (workflow) (16:19, 11 December 2014)
- ChIP-Seq - Identify composite modules on peaks (TRANSFAC(R)) (workflow) (16:19, 11 December 2014)
- ChIP-Seq - Identify TF binding sites on peaks (TRANSFAC(R)) (workflow) (16:19, 11 December 2014)
- Analyze any DNA sequence (TRANSFAC(R)) (workflow) (16:19, 11 December 2014)
- Identify composite modules in promoters (TRANSFAC(R)) (workflow) (16:19, 11 December 2014)
- Identify enriched composite modules in promoters (TRANSFAC(R)) (workflow) (16:19, 11 December 2014)
- Mapping to ontologies for multiple gene sets (TRANSPATH(R)) (workflow) (16:19, 11 December 2014)
- Probes - Affymetrix HuGene-2-0-st (16:32, 11 December 2014)
- Probes - Affymetrix HuGene-2-1-st (16:32, 11 December 2014)
- Probes - Affymetrix miRNA-2-0 (16:32, 11 December 2014)
- Probes - Affymetrix miRNA-3-0 (16:32, 11 December 2014)
- Probes - Affymetrix RaGene-2-0-st (16:32, 11 December 2014)
- Probes - Affymetrix miRNA-4-0 (16:32, 11 December 2014)
- MiRNA - miRBase (16:32, 11 December 2014)
- Lucene indexes creation (16:47, 11 December 2014)
- Virtual physiological human (01:56, 9 January 2015)
- BioGears (06:25, 10 January 2015)
- HumanSim (06:50, 10 January 2015)
- Acknowledgements (13:31, 19 March 2015)
- KeyNodes hub (16:28, 22 May 2015)
- R installation (16:21, 4 June 2015)
- Antimony (18:08, 21 July 2015)
- BioNetGen (18:16, 21 July 2015)
- Tests (11:13, 25 August 2015)
- Probes - Affymetrix miRNA-1-0 (12:18, 25 August 2015)
- CRISPR Cas9 and specific oligonucleotides (analysis) (12:19, 25 August 2015)
- Binding regions summary (analysis) (12:19, 25 August 2015)
- Cis-module identification (analysis) (12:19, 25 August 2015)
- Cis-module sets near given genes (analysis) (12:19, 25 August 2015)
- Convert files to tracks (analysis) (12:19, 25 August 2015)
- Distinct TF classes (analysis) (12:19, 25 August 2015)
- Count olig frequencies (analysis) (12:19, 25 August 2015)
- Gathering genome statistics (analysis) (12:19, 25 August 2015)
- Filtration of predicted sites by filters (analysis) (12:19, 25 August 2015)
- Identification of cis-regulatory modules with given pattern of TF-classes (analysis) (12:19, 25 August 2015)
- Identification of composite elements by filters (analysis) (12:20, 25 August 2015)
- Merge binding regions for cell-lines (analysis) (12:20, 25 August 2015)
- Peak finders comparison (analysis) (12:20, 25 August 2015)
- Non-merged ChIP-Seq tracks summary (analysis) (12:20, 25 August 2015)
- Multivariate regression analysis (12:20, 25 August 2015)
- Multivariate sample analysis (12:20, 25 August 2015)
- Two multivariate sample analysis (12:20, 25 August 2015)
- Summary on AUCs (analysis) (12:20, 25 August 2015)
- BioPAX file (12:20, 25 August 2015)
- Data (host object) (12:21, 25 August 2015)
- Transform (host object) (12:21, 25 August 2015)
- Identify enriched motifs in promoters (TRANSFAC(R)) (workflow) (12:22, 25 August 2015)
- Identify enriched motifs in tracks (TRANSFAC(R)) (workflow) (12:22, 25 August 2015)
- Find enriched TF binding sites in variation sites (TRANSFAC(R)) (workflow) (12:22, 25 August 2015)
- Enriched upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (12:22, 25 August 2015)
- Mapping to ontologies and comparison for two gene sets (TRANSPATH(R)) (workflow) (12:22, 25 August 2015)
- Find common effectors for multiple gene sets (TRANSPATH(R)) (workflow) (12:22, 25 August 2015)
- Patient-specific cardiovascular model (15:08, 25 September 2015)
- RADAU V (15:06, 11 November 2015)
- Dormand-Prince (15:08, 11 November 2015)
- BioUML workbench (15:46, 29 September 2016)
- Presentations (13:53, 18 October 2016)
- Muscle metabolism (18:10, 25 November 2016)
- BioUML development roadmap (14:56, 11 January 2017)
- Euler (12:11, 10 February 2017)
- JVODE (21:47, 12 February 2017)
- Simulation (22:25, 12 February 2017)
- Substances - DrugBank (18:58, 13 February 2017)
- Substances - KEGG (18:58, 13 February 2017)
- Substances - CAS (18:58, 13 February 2017)
- Proteins - Ensembl (18:59, 13 February 2017)
- Genes - Ensembl (18:59, 13 February 2017)
- Transcripts - Ensembl (18:59, 13 February 2017)
- Proteins - Transpath isogroups (18:59, 13 February 2017)
- Substances (reference type) (18:59, 13 February 2017)
- Create custom project (analysis) (18:59, 13 February 2017)
- Cluster analysis (19:00, 13 February 2017)
- ChIP-Seq peaks clusterization (analysis) (19:00, 13 February 2017)
- Create matrix by mixture of normal components (analysis) (19:00, 13 February 2017)
- IPS prediction (analysis) (19:00, 13 February 2017)
- Identical best site ROC-curves (analysis) (19:00, 13 February 2017)
- IPS ROC-curves (analysis) (19:00, 13 February 2017)
- Common and IPS scores correlation (analysis) (19:00, 13 February 2017)
- Correlations of best sites (analysis) (19:00, 13 February 2017)
- ChIP-Seq characteristics distribution (analysis) (19:00, 13 February 2017)
- Locations of best sites (analysis) (19:00, 13 February 2017)
- Matrix comparison (analysis) (19:00, 13 February 2017)
- Mixture of normal components (analysis) (19:00, 13 February 2017)
- Oligonucleotides in sequence samples (analysis) (19:00, 13 February 2017)
- Matrix derivation (analysis) (19:00, 13 February 2017)
- Prediction of TF-binding sites of given TF (analysis) (19:00, 13 February 2017)
- ROC curves for best sites union (analysis) (19:00, 13 February 2017)
- Ribo-Seq and mRNA features forming (analysis) (19:00, 13 February 2017)
- ROC-curves in grouped peaks (analysis) (19:00, 13 February 2017)
- ROC-curves in clusterized peaks (analysis) (19:00, 13 February 2017)
- ROC-curves in overlapped ChIP-Seq peaks (analysis) (19:00, 13 February 2017)
- Transform track to table (analysis) (19:00, 13 February 2017)
- Univariate sample analysis (19:00, 13 February 2017)
- Colon cancer signature (analysis) (19:00, 13 February 2017)
- Univariate samples analysis (19:00, 13 February 2017)
- BioUML format (19:00, 13 February 2017)
- CellML (file format) (19:00, 13 February 2017)
- Antimony (file format) (19:00, 13 February 2017)
- BioNetGen language format (19:01, 13 February 2017)
- GinSim (file format) (19:01, 13 February 2017)
- SIF (file format) (19:01, 13 February 2017)
- SBGN-ML (file format) (19:01, 13 February 2017)
- SBML (file format) (19:01, 13 February 2017)
- SBML(CellDesigner) (file format) (19:01, 13 February 2017)
- SED-ML file (19:01, 13 February 2017)
- Save network (analysis) (19:01, 13 February 2017)
- Visualize results (analysis) (19:01, 13 February 2017)
- Save hits (analysis) (19:01, 13 February 2017)
- Simulate Population (analysis) (19:01, 13 February 2017)
- Flux Balance Analysis (workflow) (19:02, 13 February 2017)
- Quantification of RNA-seq in BAM format for mouse mm9 single end (workflow) (19:02, 13 February 2017)
- Quantification of RNA-seq in FASTQ format for mouse mm9 single end (workflow) (19:02, 13 February 2017)
- Identify enriched motifs in tissue specific tracks (TRANSFAC(R)) (workflow) (19:02, 13 February 2017)
- Find master regulators in networks with context genes (TRANSPATH(R)) (workflow) (19:02, 13 February 2017)
- Identify enriched motifs in tissue specific promoters (TRANSFAC(R)) (workflow) (19:02, 13 February 2017)
- Find 10 master regulators in networks (TRANSPATH(R)) (workflow) (19:02, 13 February 2017)
- Cross-species identification of enriched motifs in promoters, using orthologue information (TRANSFAC(R)) (workflow) (19:02, 13 February 2017)
- Find master regulators in mutated network (workflow) (19:02, 13 February 2017)
- Find 3 master regulators in networks with context genes (TRANSPATH(R)) (workflow) (19:02, 13 February 2017)
- Search for self-regulating transcription factors (TRANSFAC(R) and TRANSPATH(R)) (workflow) (19:02, 13 February 2017)
- Focused upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) (19:02, 13 February 2017)
- Biouml.plugins.chebi (plugin) (19:02, 13 February 2017)
- Biouml.plugins.chipmunk (plugin) (19:02, 13 February 2017)
- Biouml.plugins.bowtie (plugin) (19:02, 13 February 2017)
- Biouml.plugins.agentmodeling (plugin) (19:02, 13 February 2017)
- Biouml.plugins.agilent (plugin) (19:02, 13 February 2017)
- Biouml.plugins.cellml (plugin) (19:02, 13 February 2017)
- Biouml.plugins.creasemarks (plugin) (19:02, 13 February 2017)
- Biouml.plugins.das (plugin) (19:02, 13 February 2017)
- Biouml.plugins.download (plugin) (19:02, 13 February 2017)
- Biouml.plugins.chemoinformatics (plugin) (19:02, 13 February 2017)
- Biouml.plugins.antimony (plugin) (19:02, 13 February 2017)
- Biouml.plugins.bionetgen (plugin) (19:02, 13 February 2017)
- Biouml.plugins.dropbox (plugin) (19:02, 13 February 2017)
- Biouml.plugins.endonet (plugin) (19:02, 13 February 2017)
- Biouml.plugins.biopax (plugin) (19:02, 13 February 2017)
- Biouml.plugins.expasy (plugin) (19:02, 13 February 2017)
- Biouml.plugins.expression (plugin) (19:02, 13 February 2017)
- Biouml.plugins.fbc (plugin) (19:02, 13 February 2017)
- Biouml.plugins.modelreduction (plugin) (19:03, 13 February 2017)
- Biouml.plugins.lucene (plugin) (19:03, 13 February 2017)
- Biouml.plugins.matlab (plugin) (19:03, 13 February 2017)
- Biouml.plugins.gxl (plugin) (19:03, 13 February 2017)
- Biouml.plugins.geneways (plugin) (19:03, 13 February 2017)
- Biouml.plugins.node (plugin) (19:03, 13 February 2017)
- Biouml.plugins.microarray (plugin) (19:03, 13 February 2017)
- Biouml.plugins.genemodels (plugin) (19:03, 13 February 2017)
- Biouml.plugins.genenet (plugin) (19:03, 13 February 2017)
- Biouml.plugins.hemodynamics (plugin) (19:03, 13 February 2017)
- Biouml.plugins.glycan (plugin) (19:03, 13 February 2017)
- Biouml.plugins.gne (plugin) (19:03, 13 February 2017)
- Biouml.plugins.go (plugin) (19:03, 13 February 2017)
- Biouml.plugins.googledrive (plugin) (19:03, 13 February 2017)
- Biouml.plugins.kegg (plugin) (19:03, 13 February 2017)
- Biouml.plugins.ginsim (plugin) (19:03, 13 February 2017)
- Biouml.plugins.graphml (plugin) (19:03, 13 February 2017)
- Biouml.plugins.miriam (plugin) (19:03, 13 February 2017)
- Biouml.plugins.perfectosape (plugin) (19:03, 13 February 2017)
- Biouml.plugins.proteinmodel (plugin) (19:03, 13 February 2017)
- Biouml.plugins.obo (plugin) (19:03, 13 February 2017)
- Biouml.plugins.optimization (plugin) (19:03, 13 February 2017)
- Biouml.plugins.pass (plugin) (19:03, 13 February 2017)
- Biouml.plugins.psimi (plugin) (19:03, 13 February 2017)
- Biouml.plugins.reactome.biohub (plugin) (19:03, 13 February 2017)
- Biouml.plugins.research (plugin) (19:03, 13 February 2017)
- Biouml.plugins.riboseqArticleResult (plugin) (19:03, 13 February 2017)
- Biouml.plugins.sabiork (plugin) (19:03, 13 February 2017)
- Biouml.plugins.sbgn (plugin) (19:03, 13 February 2017)
- Biouml.plugins.metabolics (plugin) (19:03, 13 February 2017)
- Biouml.plugins.sbw (plugin) (19:03, 13 February 2017)
- Biouml.plugins.svg (plugin) (19:03, 13 February 2017)
- Biouml.workbench.graph (plugin) (19:03, 13 February 2017)
- Com.developmentontheedge.server (plugin) (19:03, 13 February 2017)
- Biouml.plugins.test (plugin) (19:03, 13 February 2017)
- Biouml.plugins.sedml (plugin) (19:03, 13 February 2017)
- Biouml.plugins.wiki (plugin) (19:03, 13 February 2017)
- Ru.biosoft.access (plugin) (19:03, 13 February 2017)
- Biouml.plugins.users (plugin) (19:03, 13 February 2017)
- Ru.biosoft.access.search (plugin) (19:03, 13 February 2017)
- Com.developmentontheedge.util (plugin) (19:03, 13 February 2017)
- Biouml.plugins.stochastic (plugin) (19:03, 13 February 2017)
- Biouml.plugins.sbml (plugin) (19:03, 13 February 2017)
- Biouml.plugins.transfac (plugin) (19:03, 13 February 2017)
- Ru.biosoft.analysis.optimization (plugin) (19:03, 13 February 2017)
- Biouml.plugins.server (plugin) (19:03, 13 February 2017)
- Biouml.plugins.simulation (plugin) (19:03, 13 February 2017)
- Biouml.plugins.uniprot (plugin) (19:03, 13 February 2017)
- Biouml.plugins.softberry (plugin) (19:03, 13 February 2017)
- Biouml.plugins.simulation-test (plugin) (19:03, 13 February 2017)
- Biouml.workbench (plugin) (19:03, 13 February 2017)
- Ru.biosoft.fs (plugin) (19:03, 13 February 2017)
- Ru.biosoft.galaxy (plugin) (19:03, 13 February 2017)
- Ru.biosoft.graphics (plugin) (19:03, 13 February 2017)
- Ru.biosoft.bsa.server (plugin) (19:03, 13 February 2017)
- Ru.biosoft.graph (plugin) (19:03, 13 February 2017)
- Biouml.plugins.seek (plugin) (19:03, 13 February 2017)
- Ru.biosoft.proteome (plugin) (19:03, 13 February 2017)
- Ru.biosoft.plugins.graph (plugin) (19:03, 13 February 2017)
- Ru.biosoft.table (plugin) (19:03, 13 February 2017)
- Ru.biosoft.services (plugin) (19:03, 13 February 2017)
- Ru.biosoft.vm (plugin) (19:03, 13 February 2017)
- Ru.biosoft.server.tomcat (plugin) (19:03, 13 February 2017)
- Ru.biosoft.server (plugin) (19:03, 13 February 2017)
- Ru.biosoft.plugins.javascript (plugin) (19:03, 13 February 2017)
- Ru.biosoft.plugins.jri (plugin) (19:03, 13 February 2017)
- Ru.biosoft.works (plugin) (19:03, 13 February 2017)
- Ru.biosoft.server.servlets (plugin) (19:03, 13 February 2017)
- Ru.biosoft.templates (plugin) (19:03, 13 February 2017)
- Ru.biosoft.treetable (plugin) (19:03, 13 February 2017)
- Ru.biosoft.math (plugin) (19:03, 13 February 2017)
- Ru.biosoft.workbench (plugin) (19:03, 13 February 2017)
- Servers (21:54, 3 April 2017)
- Modeling cardiovascular system (17:08, 3 October 2017)
- GTRD Workflow (17:59, 29 November 2017)
- Creating Galaxy tool (14:04, 17 January 2018)
- Моделирование сердечно-сосудистой системы (17:18, 25 January 2018)
- Gene expression prediction (22:09, 1 April 2018)
- Cell type specific TFBS prediction (15:15, 5 April 2018)
- Ensembl installation (13:58, 24 October 2018)
- Download (16:20, 25 December 2018)
- Landing (16:44, 26 December 2018)
- Modeling Antihypertensive drugs (18:38, 21 January 2019)
- DAE Models examples (13:23, 12 March 2019)
- Drugs - DrugBank (16:30, 12 March 2019)
- Categories - BKL (16:30, 12 March 2019)
- Substances - DrugBank (geneXplain) (16:30, 12 March 2019)
- Substances - Pharmaceutical compounds (16:30, 12 March 2019)
- Proteins - Reactome (16:30, 12 March 2019)
- Stem-loop-miRNA - miRBase (16:30, 12 March 2019)
- Mature-miRNA - miRBase (16:30, 12 March 2019)
- Substances - ChEBI (16:30, 12 March 2019)
- Methylation probes - Illumina (16:31, 12 March 2019)
- Proteins - UniProt (16:31, 12 March 2019)
- Probes - Affymetrix HTA-2-0 (16:31, 12 March 2019)
- Classification analysis (16:32, 12 March 2019)
- Data matrix operations (analysis) (16:32, 12 March 2019)
- LS-regression analysis (16:32, 12 March 2019)
- Regression analysis (16:32, 12 March 2019)
- LincRNA and mRNA features (analysis) (16:32, 12 March 2019)
- Colon cancer signature2 (analysis) (16:32, 12 March 2019)
- Calculate TFs regulatory score (analysis) (16:33, 12 March 2019)
- Cytoscape network format (16:33, 12 March 2019)
- Add reactants (analysis) (16:33, 12 March 2019)
- Add expression values (analysis) (16:33, 12 March 2019)
- Find longest connected chains (analysis) (16:33, 12 March 2019)
- Find shortest path between two sets (analysis) (16:33, 12 March 2019)
- Regulator search (analysis) (16:33, 12 March 2019)
- Bsa (host object) (16:34, 12 March 2019)
- Enrichment (host object) (16:34, 12 March 2019)
- Model (host object) (16:34, 12 March 2019)
- Normalize (host object) (16:34, 12 March 2019)
- Analyze any DNA sequence, EMBL (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes (Affymetrix probes) (workflow) (16:34, 12 March 2019)
- ChIP-Seq - Identify and classify target genes (workflow) (16:34, 12 March 2019)
- Analyze any DNA sequence, Fasta (workflow) (16:34, 12 March 2019)
- Analyze any DNA sequence, GeneBank (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes (Agilent Tox probes) (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes (Agilent probes) (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes (Illumina probes) (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes using Hypergeometric test (Affymetrix probes) (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes using Hypergeometric test (Agilent probes) (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes using Hypergeometric test (Illumina probes) (workflow) (16:34, 12 March 2019)
- Convert identifiers for multiple gene sets (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes using EBarrays (workflow) (16:34, 12 March 2019)
- Compute differentially expressed genes using Limma (workflow) (16:34, 12 March 2019)
- Find common effectors for multiple gene sets (GeneWays) (workflow) (16:34, 12 March 2019)
- Explain my genes (workflow) (16:34, 12 March 2019)
- Find genome variants and indels from full-genome NGS (workflow) (16:34, 12 March 2019)
- Find common effectors in networks (GeneWays) (workflow) (16:34, 12 March 2019)
- Find gene fusions from RNA-seq (workflow) (16:34, 12 March 2019)
- Find genome variants and indels from RNA-seq (workflow) (16:34, 12 March 2019)
- Find master regulators for multiple gene sets (GeneWays) (workflow) (16:34, 12 March 2019)
- Find master regulators in networks (GeneWays) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis (Agilent probes) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis (Affymetrix probes) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis (Gene table) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis (Illumina probes) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis - select a classification (Gene table) (workflow) (16:34, 12 March 2019)
- Mapping to GO ontologies and comparison for two gene sets (workflow) (16:34, 12 March 2019)
- Hypergeometric analysis for multiple inputs (workflow) (16:34, 12 March 2019)
- Mapping to ontologies for multiple gene sets (workflow) (16:34, 12 March 2019)
- Mapping to ontologies (Gene table) (workflow) (16:34, 12 March 2019)
- Prediction of miRNA binding sites (workflow) (16:34, 12 March 2019)
- Mapping to ontology - select a classification (2 Gene tables) (workflow) (16:34, 12 March 2019)
- Mapping to ontology - select a classification (Gene table) (workflow) (16:34, 12 March 2019)
- Mapping to ontology - select a classification (Multiple Gene tables) (workflow) (16:34, 12 March 2019)
- Quantification of RNA-seq with Cufflinks (no de-novo assembly) for FASTQ files (workflow) (16:34, 12 March 2019)
- Quantification of RNA-seq with Cufflinks (with de-novo assembly) for FASTQ files (workflow) (16:34, 12 March 2019)
- Quantification of RNA-seq with Cufflinks for multiple BAM files (workflow) (16:34, 12 March 2019)
- Analyze SNP list (GTRD) (workflow) (16:34, 12 March 2019)
- SRA to FASTQ (workflow) (16:34, 12 March 2019)
- Analyze any DNA sequence (GTRD) (workflow) (16:34, 12 March 2019)
- Analyze any DNA sequence for site enrichment (GTRD) (workflow) (16:34, 12 March 2019)
- Analyze promoters (GTRD) (workflow) (16:34, 12 March 2019)
- Identify enriched composite modules in promoters (GTRD) (workflow) (16:34, 12 March 2019)
- Identify enriched motifs in promoters (GTRD) (workflow) (16:34, 12 March 2019)
- ChIP-Seq - Identify and classify target genes (HumanPSD(TM)) (workflow) (16:34, 12 March 2019)
- Cross-species mapping to ontologies, using orthologue information (HumanPSD(TM)) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis HumanPSD (Affymetrix probes) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis HumanPSD (Agilent probes) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis HumanPSD (Gene table) (workflow) (16:34, 12 March 2019)
- Gene set enrichment analysis HumanPSD (Illumina probes) (workflow) (16:34, 12 March 2019)
- Mapping to ontologies (HumanPSD(TM)) (workflow) (16:34, 12 March 2019)
- Mapping to ontologies and comparison for two gene sets (HumanPSD(TM)) (workflow) (16:34, 12 March 2019)
- Analyze SNP list (TRANSFAC(R)) (workflow) (16:34, 12 March 2019)
- Analyze promoters (TRANSFAC(R)) (workflow) (16:34, 12 March 2019)
- Mapping to ontologies for multiple gene sets (HumanPSD(TM)) (workflow) (16:34, 12 March 2019)
- Analyze any DNA sequence for site enrichment (TRANSFAC(R)) (workflow) (16:34, 12 March 2019)
- ChIP-Seq - Identify and classify target genes (TRANSPATH(R)) (workflow) (16:35, 12 March 2019)
- Find master regulators in mutated network (TRANSPATH(R)) (workflow) (16:35, 12 March 2019)
- Mapping to ontologies (TRANSPATH(R)) (workflow) (16:35, 12 March 2019)
- Upstream analysis with feedback loop (TRANSFAC(R) and TRANSPATH(R)) (workflow) (16:35, 12 March 2019)
- Biouml.plugins.bkl (plugin) (16:35, 12 March 2019)
- Ru.biosoft.jobcontrol (plugin) (16:35, 12 March 2019)
- Biouml.plugins.genomeenhancer (plugin) (16:35, 12 March 2019)
- Ru.biosoft.exception (plugin) (16:35, 12 March 2019)
- Biouml.plugins.mirbase (plugin) (16:35, 12 March 2019)
- Biouml.plugins.reactome (plugin) (16:35, 12 March 2019)
- Biouml.plugins.bindingregions (plugin) (16:35, 12 March 2019)
- Ru.biosoft.bsa (plugin) (16:35, 12 March 2019)
- Biouml.plugins.gtrd (plugin) (16:35, 12 March 2019)
