Rbiouml

rbiouml is an R package which allows accessing BioUML server from R script. It's available on CRAN repository.

Main capabilities

Retrieving tables from BioUML (including any items which can be represented as tables: profiles, some kinds of tracks, etc.);
Storing tables in BioUML;
Listing items in BioUML repository;
Launching BioUML analyses;
Launching BioUML workflows.

rbiouml depends on RCurl package that requires libcurl library and header files. On ubuntu install libcurl4-gnutls-dev:

sudo apt-get install libcurl4-gnutls-dev

Use the following R command to install rbiouml:

install.packages("rbiouml")

To update from older version use:

update.packages("rbiouml")