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  1. Composite module to proteins (analysis)
  2. ComputeProfileSums (analysis)
  3. ComputeTranscriptProfile (analysis)
  4. Compute coverage by window (analysis)
  5. Compute coverage profile (analysis)
  6. Compute differentially expressed genes (Affymetrix probes) (workflow)
  7. Compute differentially expressed genes (Agilent Tox probes) (workflow)
  8. Compute differentially expressed genes (Agilent probes) (workflow)
  9. Compute differentially expressed genes (Illumina probes) (workflow)
  10. Compute differentially expressed genes using EBarrays (workflow)
  11. Compute differentially expressed genes using Hypergeometric test (Affymetrix probes) (workflow)
  12. Compute differentially expressed genes using Hypergeometric test (Agilent probes) (workflow)
  13. Compute differentially expressed genes using Hypergeometric test (Illumina probes) (workflow)
  14. Compute differentially expressed genes using Limma (workflow)
  15. Compute profile thresholds (analysis)
  16. Construct IPS CisModule (analysis)
  17. Construct composite modules (analysis)
  18. Construct composite modules on track (correlation) (analysis)
  19. Construct composite modules on tracks (analysis)
  20. Construct composite modules on tracks (without site search) (analysis)
  21. Construct composite modules on tracks with keynodes (analysis)
  22. Construct composite modules with keynodes (analysis)
  23. Context item (extension point)
  24. Continue CMA (analysis)
  25. Contributors
  26. Convert diagram to Transpath (analysis)
  27. Convert diagram to pairs (analysis)
  28. Convert files to tracks (analysis)
  29. Convert genomic BAM to transcriptomic (analysis)
  30. Convert identifiers for multiple gene sets (workflow)
  31. Convert site models to proteins (analysis)
  32. Convert site search summary (analysis)
  33. Convert table (analysis)
  34. Convert table to VCF track (analysis)
  35. Convert table to track (analysis)
  36. Convert table via homology (analysis)
  37. Convert tracks to VCF (analysis)
  38. Copy data element (analysis)
  39. Copy folder (analysis)
  40. Correlation Analysis
  41. Correlations of best sites (analysis)
  42. Count olig frequencies (analysis)
  43. Count reads in transcripts (analysis)
  44. CoverageCheker (analysis)
  45. Coverage Profiles Cutoff (analysis)
  46. Covid-19 Differential Delay Model
  47. Covid 19
  48. Covid 19 parameters
  49. Creasemarks analysis
  50. Create DAS track (analysis)
  51. Create IPS model (analysis)
  52. Create Match model (analysis)
  53. Create custom project (analysis)
  54. Create database from diagram (analysis)
  55. Create flat files (analysis)
  56. Create folder (analysis)
  57. Create matrix by mixture of normal components (analysis)
  58. Create matrix logo (analysis)
  59. Create miRNA promoters (analysis)
  60. Create per TF flat files (analysis)
  61. Create profile from CMA model (analysis)
  62. Create profile from gene table (analysis)
  63. Create profile from matrix library (analysis)
  64. Create profile from site model table (analysis)
  65. Create random track (analysis)
  66. Create state (analysis)
  67. Create tissue-specific promoter track (analysis)
  68. Create transcript region track (analysis)
  69. Create weight matrix model (analysis)
  70. Creating Galaxy tool
  71. Cross-species identification of enriched motifs in promoters, using orthologue information (TRANSFAC(R)) (workflow)
  72. Cross-species mapping to ontologies, using orthologue information (HumanPSD(TM)) (workflow)
  73. Cross cost grid layout
  74. Cytoscape network format
  75. DAE Models examples
  76. DDMoRe consortium
  77. DNase-seq Group and Profile Generation (Previous version) (analysis)
  78. DNase-seq Group and Profile Generation (analysis)
  79. Danon et al. Covid-19 transmission in England
  80. Das (host object)
  81. DataFilter (host object)
  82. Data (host object)
  83. Data collection listener (extension point)
  84. Data matrix operations (analysis)
  85. Databases
  86. Databases installation
  87. Default (perspective)
  88. Defines.js
  89. Descrete events
  90. Developed models
  91. DiChIPHorde (analysis)
  92. DiChIPMunk (analysis)
  93. Diagram (element type)
  94. Diagram document
  95. Diagram editing history
  96. Diagram graph compare analysis
  97. Diagram to user hub collection (analysis)
  98. Diagram type
  99. Diagram view part (extension point)
  100. Diff manager (extension point)
  101. Differential expression with DESeq (analysis)
  102. Disease - MeSH
  103. Distinct TF classes (analysis)
  104. Docker meta
  105. Document factory (extension point)
  106. Document pane
  107. Dormand-Prince
  108. Double encode SOLiD (analysis)
  109. Download
  110. Download model (analysis)
  111. Drugs - DrugBank
  112. EBarrays (analysis)
  113. EMBL format
  114. Effector search (analysis)
  115. Element action (extension point)
  116. Element type
  117. Encode quality metrics estimation (analysis)
  118. Enhance Score (analysis)
  119. Enriched upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow)
  120. Enrichment (host object)
  121. Enrichment analysis
  122. Ensembl
  123. Ensembl (host object)
  124. Ensembl installation
  125. Enzymes - ExPASy
  126. Enzymes - KEGG
  127. Estimate read density (analysis)
  128. Euler
  129. Evolution strategy (SRES) (analysis)
  130. Explain my genes (workflow)
  131. Export (extension point)
  132. Export element (analysis)
  133. Export master track (analysis)
  134. Export metadata json (analysis)
  135. Export per cell clusters (analysis)
  136. Expression mapping
  137. Extend network (analysis)
  138. Extract RNA length (analysis)
  139. Extract ribosomal RNA (analysis)
  140. Fantom analysis
  141. Fast table filter (analysis)
  142. Fasta format
  143. Fastq compressed (file format)
  144. Fastq format
  145. Fastq mcf
  146. Fastx clip
  147. Features
  148. File (element type)
  149. Filter SPAdes output
  150. Filter duplicate rows (analysis)
  151. Filter one track by another (analysis)
  152. Filter table (analysis)
  153. Filter track by condition (analysis)
  154. Filtering experiments by cell types (analysis)
  155. Filtration of predicted sites by filters (analysis)
  156. Find 10 master regulators in networks (TRANSPATH(R)) (workflow)
  157. Find 3 master regulators in networks with context genes (TRANSPATH(R)) (workflow)
  158. Find common effectors for multiple gene sets (GeneWays) (workflow)
  159. Find common effectors for multiple gene sets (TRANSPATH(R)) (workflow)
  160. Find common effectors in networks (GeneWays) (workflow)
  161. Find common effectors in networks (TRANSPATH(R)) (workflow)
  162. Find enriched TF binding sites in variation sites (TRANSFAC(R)) (workflow)
  163. Find gene fusions from RNA-seq (workflow)
  164. Find genome variants and indels from RNA-seq (workflow)
  165. Find genome variants and indels from full-genome NGS (workflow)
  166. Find longest connected chains (analysis)
  167. Find master regulators for multiple gene sets (GeneWays) (workflow)
  168. Find master regulators for multiple gene sets (TRANSPATH(R)) (workflow)
  169. Find master regulators in mutated network (TRANSPATH(R)) (workflow)
  170. Find master regulators in mutated network (workflow)
  171. Find master regulators in networks (GeneWays) (workflow)
  172. Find master regulators in networks (TRANSPATH(R)) (workflow)
  173. Find master regulators in networks with context genes (TRANSPATH(R)) (workflow)
  174. Find miRNA feed forward loops with CMA (analysis)
  175. Find regulatory regions (analysis)
  176. Find regulatory regions with mutations (analysis)
  177. Find shortest path between two sets (analysis)
  178. Find target genes (analysis)
  179. Find unmappable regions (analysis)
  180. FinderArticlePoints (analysis)
  181. Flux Balance Analysis (workflow)
  182. Flux Balance Constraint (analysis)
  183. Flux balance analysis
  184. Focused upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow)
  185. Fold-Change calculation (analysis)
  186. Folder (element type)
  187. Force directed layout
  188. Ftp (host object)
  189. Function (extension point)
  190. Functional classification (analysis)
  191. Functional classification by diagrams (analysis)
  192. GC island finder (analysis)
  193. GLBSOLVE (analysis)
  194. GO installation
  195. GTEX Mutation effect on sites (analysis)
  196. GTRD
  197. GTRD (perspective)
  198. GTRD Workflow
  199. GTRD analysis
  200. GTRD analysis advanced (analysis)
  201. GTRD comparison
  202. GTRD statistics
  203. GWAS format
  204. Galaxy
  205. Galaxy (host object)
  206. Galaxy admin
  207. Galaxy cloud
  208. Galaxy installation
  209. Galaxy method (element type)
  210. Gathering genome statistics (analysis)
  211. GenBank format
  212. GeneNet
  213. GeneXplain
  214. GeneXplain GmbH
  215. Gene Ontology
  216. Gene Transfer Format
  217. Gene expression prediction
  218. Gene features (analysis)
  219. Gene overlap statistics (analysis)
  220. Gene set enrichment analysis (Affymetrix probes) (workflow)
  221. Gene set enrichment analysis (Agilent probes) (workflow)
  222. Gene set enrichment analysis (Gene table) (workflow)
  223. Gene set enrichment analysis (Illumina probes) (workflow)
  224. Gene set enrichment analysis - select a classification (Gene table) (workflow)
  225. Gene set enrichment analysis HumanPSD (Affymetrix probes) (workflow)
  226. Gene set enrichment analysis HumanPSD (Agilent probes) (workflow)
  227. Gene set enrichment analysis HumanPSD (Gene table) (workflow)
  228. Gene set enrichment analysis HumanPSD (Illumina probes) (workflow)
  229. Gene set to track (analysis)
  230. General Feature Format
  231. General control panel
  232. Generate Table From JSON (analysis)
  233. Generate dynamic model (analysis)
  234. Generate workflow from annotation diagram (analysis)
  235. Generic file
  236. Genes (reference type)
  237. Genes - BKL
  238. Genes - Ensembl
  239. Genes - Entrez
  240. Genes - GenBank
  241. Genes - Gene symbol
  242. Genes - Illumina
  243. Genes - Transpath
  244. Genes - Unigene
  245. Geneways
  246. Genome Browser iframe
  247. Genome Browser json
  248. Genome browser
  249. Genome coverage (analysis)
  250. Get miRNA targets (analysis)

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