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1. 1-dimensional arterial tree model
2. 3D viewer
3. AUC Estimation For meta-cluster track (analysis)
4. About dialog (extension point)
5. Acknowledgements
6. Adaptive simulated annealing (analysis)
7. Add calculated column (analysis)
8. Add expression values (analysis)
9. Add genes from CMA (analysis)
10. Add reactants (analysis)
11. Affymetrix CEL file
12. Affymetrix normalization (analysis)
13. Agilent microarray file
14. Agilent normalization (analysis)
15. Algebraic steady state (analysis)
16. Analyses (extension point)
17. Analysis (element type)
18. Analysis method development
19. Analysis of Binding Regions (analysis)
20. Analysis of Cis-Regulatory Modules (analysis)
21. Analyze SNP list (GTRD) (workflow)
22. Analyze SNP list (TRANSFAC(R)) (workflow)
23. Analyze any DNA sequence, EMBL (workflow)
24. Analyze any DNA sequence, Fasta (workflow)
25. Analyze any DNA sequence, GeneBank (workflow)
26. Analyze any DNA sequence (GTRD) (workflow)
27. Analyze any DNA sequence (TRANSFAC(R)) (workflow)
28. Analyze any DNA sequence for site enrichment (GTRD) (workflow)
29. Analyze any DNA sequence for site enrichment (TRANSFAC(R)) (workflow)
30. Analyze miRNA target enrichment (analysis)
31. Analyze promoters (GTRD) (workflow)
32. Analyze promoters (TRANSFAC(R)) (workflow)
33. Annotate diagram (analysis)
34. Annotate table (analysis)
35. Annotate track with genes (analysis)
36. Annotation (extension point)
37. Antimony
38. Antimony (file format)
39. Application log (viewpart)
40. Apply CMA model to tracks (analysis)
41. Apply events (analysis)
42. Apply state to diagram (analysis)
43. ArticleComparator (analysis)
44. ArticleTrackCreator (analysis)
45. Autosome.Ru
46. BAM filter multi-hits (analysis)
47. BAM filter strand specific (analysis)
48. BED format
49. BPMN
50. Beans (extension point)

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