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- Matrices (reference type) (3 revisions)
- Fantom analysis (3 revisions)
- Optimization document (3 revisions)
- Cluster analysis (3 revisions)
- Genes - BKL (3 revisions)
- Transcriptome mappability (analysis) (3 revisions)
- Identification of cis-regulatory modules with given pattern of TF-classes (analysis) (3 revisions)
- Make GTF for riboseq alignment (analysis) (3 revisions)
- Merge simulation results (analysis) (3 revisions)
- Select keynodes with top targets (analysis) (3 revisions)
- Treatment Simulation (analysis) (3 revisions)
- Quality control analysis (3 revisions)
- Reference type (extension point) (3 revisions)
- KeyNodes hub (3 revisions)
- Explain my genes (workflow) (3 revisions)
- Server administrator (3 revisions)
- Download model (analysis) (3 revisions)
- Blast alignment coverage (analysis) (3 revisions)
- Score based FBC table builder (analysis) (3 revisions)
- Site search report (analysis) (3 revisions)
- ArticleComparator (analysis) (3 revisions)
- Transcriptome minimal unique length (analysis) (3 revisions)
- Identification of composite elements by filters (analysis) (3 revisions)
- JVODE (3 revisions)
- Merge table columns (analysis) (3 revisions)
- Select random rows (analysis) (3 revisions)
- Sort SQL track (analysis) (3 revisions)
- Convert diagram to Transpath (analysis) (3 revisions)
- Quality control metrics (analysis) (3 revisions)
- Regression analysis (3 revisions)
- SNPs in binding regions (analysis) (3 revisions)
- MicroRNA finder (analysis) (3 revisions)
- Find gene fusions from RNA-seq (workflow) (3 revisions)
- SiteAnalysis (host object) (3 revisions)
- 1-dimensional arterial tree model (3 revisions)
- Perspective (extension point) (3 revisions)
- Drugs - DrugBank (3 revisions)
- Matrices - TRANSFAC (3 revisions)
- Find miRNA feed forward loops with CMA (analysis) (3 revisions)
- ArticleTrackCreator (analysis) (3 revisions)
- Proteins (reference type) (3 revisions)
- Transcripts (reference type) (3 revisions)
- Create miRNA promoters (analysis) (3 revisions)
- Visible plugin (extension point) (3 revisions)
- Split VCF by regulation (analysis) (3 revisions)
- Analyze any DNA sequence, EMBL (workflow) (3 revisions)
- Probes (reference type) (3 revisions)
- Convert diagram to pairs (analysis) (3 revisions)
- Proteins - Transfac (3 revisions)
- Update pubmed (analysis) (3 revisions)
- Regression analysis advanced (analysis) (3 revisions)
- Find genome variants and indels from RNA-seq (workflow) (3 revisions)
- Categories - ExPASy (3 revisions)
- Cis-module sets near given genes (analysis) (3 revisions)
- 3D viewer (3 revisions)
- Copy data element (analysis) (3 revisions)
- Install Reactome (analysis) (3 revisions)
- Find regulatory regions (analysis) (3 revisions)
- ChIP-Seq - Identify and classify target genes (TRANSPATH(R)) (workflow) (3 revisions)
- Prediction of TF-binding sites of given TF (analysis) (3 revisions)
- Proteins - BKL (3 revisions)
- Identify enriched composite modules in promoters (GTRD) (workflow) (3 revisions)
- Map Transfac sites to genome (analysis) (3 revisions)
- Select top rows (analysis) (3 revisions)
- Split fasta (analysis) (3 revisions)
- Analyze any DNA sequence, Fasta (workflow) (3 revisions)
- Convert files to tracks (analysis) (3 revisions)
- Proteins - Transpath (3 revisions)
- TreeMap on Functional classification (analysis) (3 revisions)
- Find genome variants and indels from full-genome NGS (workflow) (3 revisions)
- Set initial values from simulation result (analysis) (3 revisions)
- Pharmaceutical Compounds analysis (3 revisions)
- Compute differentially expressed genes (Agilent Tox probes) (workflow) (3 revisions)
- DataFilter (host object) (3 revisions)
- Bsa (host object) (3 revisions)
- Prediction of miRNA binding sites (workflow) (3 revisions)
- Construct composite modules on track (correlation) (analysis) (3 revisions)
- BAM filter multi-hits (analysis) (3 revisions)
- Proteins - EndoNet (3 revisions)
- Transcripts - Illumina (3 revisions)
- Hypergeometric analysis for multiple inputs (workflow) (3 revisions)
- Reads to matrices (workflow) (3 revisions)
- Filtration of predicted sites by filters (analysis) (3 revisions)
- CRISPR Cas9 and specific oligonucleotides (analysis) (3 revisions)
- SelectionTrustClusters (analysis) (3 revisions)
- Analyze any DNA sequence, GeneBank (workflow) (3 revisions)
- Table imputation (analysis) (3 revisions)
- Convert genomic BAM to transcriptomic (analysis) (3 revisions)
- Proteins - Transpath complexes (3 revisions)
- Quantification of RNA-seq with Cufflinks (no de-novo assembly) for FASTQ files (workflow) (3 revisions)
- LS-regression analysis (3 revisions)
- Mapping to ontology - select a classification (2 Gene tables) (workflow) (3 revisions)
- SRA to FASTQ (workflow) (3 revisions)
- Find longest connected chains (analysis) (3 revisions)
- Share molecules (analysis) (3 revisions)
- Track correlation (analysis) (3 revisions)
- Ribo-Seq and mRNA features forming (analysis) (3 revisions)
- Moved class (extension point) (3 revisions)
- Find shortest path between two sets (analysis) (3 revisions)
- Collaborative diagram editing (3 revisions)
- Algebraic steady state (analysis) (3 revisions)
- Genes - Illumina (3 revisions)
- BAM filter strand specific (analysis) (3 revisions)
- Mappability histogram (analysis) (3 revisions)
- SEDX archive (file format) (3 revisions)
- CR cluster selector (analysis) (3 revisions)
- Ftp (host object) (3 revisions)
- Change diagram (analysis) (3 revisions)
- Compare TFBS mutations (analysis) (3 revisions)
- Convert identifiers for multiple gene sets (workflow) (3 revisions)
- Two multivariate sample analysis (3 revisions)
- Quantification of RNA-seq with Cufflinks (with de-novo assembly) for FASTQ files (workflow) (3 revisions)
- Import HOCOMOCO (analysis) (3 revisions)
- Docker meta (3 revisions)
- Mapping to ontology - select a classification (Gene table) (workflow) (3 revisions)
- SVM (analysis) (3 revisions)
- Model (host object) (3 revisions)
- Short term model of the heart output regulation (3 revisions)
- Open per TF view (analysis) (3 revisions)
- GTRD analysis (3 revisions)
- Classification analysis advanced (analysis) (3 revisions)
- Plot2D (analysis) (3 revisions)
- RiboSeqExp (analysis) (3 revisions)
- Fastx clip (3 revisions)
- Colon cancer signature2 (analysis) (3 revisions)
- Genes - Transpath (3 revisions)
- Proteins - GTRD (3 revisions)
- Transform (host object) (3 revisions)
- Proteins - Transpath modified forms (3 revisions)
- Identify enriched motifs in promoters (TRANSFAC(R)) (workflow) (3 revisions)
- Mapping to GO ontologies and comparison for two gene sets (workflow) (3 revisions)
- SEEK Synchronize (analysis) (3 revisions)
- BioUML installation (3 revisions)
- Quantification of RNA-seq with Cufflinks for multiple BAM files (workflow) (3 revisions)
- Upstream analysis with feedback loop (TRANSFAC(R) and TRANSPATH(R)) (workflow) (3 revisions)
- Import ensembl homology (analysis) (3 revisions)
- Remove unobservable molecules (analysis) (3 revisions)
- Large sequence minimal unique length (analysis) (3 revisions)
- Mapping to ontology - select a classification (Multiple Gene tables) (workflow) (3 revisions)
- Sign test (analysis) (3 revisions)
- GTRD analysis advanced (analysis) (3 revisions)
- Classification hub (3 revisions)
- Plot bar chart (analysis) (3 revisions)
- Antimony (file format) (3 revisions)
- RiboseqArticleResult (analysis) (3 revisions)
- Find unmappable regions (analysis) (3 revisions)
- Prepare cluster to exp table (analysis) (3 revisions)
- Transform table (analysis) (3 revisions)
- Proteins - Transpath peptides (3 revisions)
- Create profile from site model table (analysis) (3 revisions)
- Recon transformer (analysis) (3 revisions)
- Method description HTML file (3 revisions)
- Find common effectors for multiple gene sets (GeneWays) (workflow) (3 revisions)
- Sequence (element type) (3 revisions)
- Peak finders comparison (analysis) (3 revisions)
- Stem loop predictor (analysis) (3 revisions)
- Analyze any DNA sequence for site enrichment (GTRD) (workflow) (3 revisions)
- Convert site search summary (analysis) (3 revisions)
- BioUML overview (4 revisions)
- Biouml.plugins.download (plugin) (4 revisions)
- Cell - EndoNet (4 revisions)
- Open tracks for all TF (analysis) (4 revisions)
- Site models - GTRD (4 revisions)
- Summary on AUCs (analysis) (4 revisions)
- Count reads in transcripts (analysis) (4 revisions)
- Create database from diagram (analysis) (4 revisions)
- Construct composite modules with keynodes (analysis) (4 revisions)
- Analyze any DNA sequence for site enrichment (TRANSFAC(R)) (workflow) (4 revisions)
- Quasi-Steady-State Analysis (4 revisions)
- Biouml.plugins.dropbox (plugin) (4 revisions)
- Generic file (4 revisions)
- Apply CMA model to tracks (analysis) (4 revisions)
- Transcript set to track (analysis) (4 revisions)
- Parameter fitting (analysis) (4 revisions)
- Softberry, Inc. (4 revisions)
- Grid layout (4 revisions)
- LincRNA and mRNA features (analysis) (4 revisions)
- Add genes from CMA (analysis) (4 revisions)
- Apply events (analysis) (4 revisions)
- Hormone - EndoNet (4 revisions)
- Identical best site ROC-curves (analysis) (4 revisions)
- Biouml.plugins.glycan (plugin) (4 revisions)
- Biouml.plugins.riboseqArticleResult (plugin) (4 revisions)
- Filter duplicate rows (analysis) (4 revisions)
- Mutation effect on sites (analysis) (4 revisions)
- Parameter identifiability (optimization) (analysis) (4 revisions)
- Ru.biosoft.plugins.graph (plugin) (4 revisions)
- ComputeTranscriptProfile (analysis) (4 revisions)
- Ru.biosoft.vm (plugin) (4 revisions)
- Modular model of the human CVS v.2 (4 revisions)
- Add reactants (analysis) (4 revisions)
- Compute differentially expressed genes using Limma (workflow) (4 revisions)
- Isoforms - GTRD (4 revisions)
- ChIP-seq peaks - GTRD (4 revisions)
- Parameter identifiability (table) (analysis) (4 revisions)
- Моделирование сердечно-сосудистой системы (4 revisions)
- Install ExPASy (analysis) (4 revisions)
- Matrices - GTRD (4 revisions)
- Compute profile thresholds (analysis) (4 revisions)
- Ru.biosoft.bsa.server (plugin) (4 revisions)
- Make meta tracks (analysis) (4 revisions)
- Key Node Sensitivity Analysis (4 revisions)
- Annotate diagram (analysis) (4 revisions)
- Cluster by path (analysis) (4 revisions)
- PredictStartSites (analysis) (4 revisions)
- HumanSim (4 revisions)
- Biouml.plugins.agilent (plugin) (4 revisions)
- Join GTRD Tracks (analysis) (4 revisions)
- Biouml.plugins.googledrive (plugin) (4 revisions)
- Kinetic parameters for COVID-19 models (4 revisions)
- Long-term model of the CVS/Renal system (4 revisions)
- Script viewpart (4 revisions)
- Orthogonal layout (4 revisions)
- Autosome.Ru (4 revisions)
- Join GTRD clusters (analysis) (4 revisions)
- ChIPMunk (perspective) (4 revisions)
- Probes - Agilent (4 revisions)
- Hash parameters (4 revisions)
- Matrix comparison (analysis) (4 revisions)
- Search binding sites (analysis) (4 revisions)
- Genes - Gene symbol (4 revisions)
- Ru.biosoft.fs (plugin) (4 revisions)
- Get transcripts track (analysis) (4 revisions)
- Classification analysis (4 revisions)
- Headless BioUML (4 revisions)
- ROC-curves in clusterized peaks (analysis) (4 revisions)
- Run a Workflow as Analysis (4 revisions)
- BuildASiteOffsetTable (analysis) (4 revisions)
- Prepare GTF annotation (analysis) (4 revisions)
- Identify enriched motifs in promoters (GTRD) (workflow) (4 revisions)
- Rebuild search indexes (analysis) (4 revisions)
- Analyze any DNA sequence (GTRD) (workflow) (4 revisions)
- Remove overlapping sites (analysis) (4 revisions)
- Probes - Illumina (4 revisions)
- ROC-curves in grouped peaks (analysis) (4 revisions)
- BuildProfileModel (analysis) (4 revisions)
- Recalculate composite module score on new track (analysis) (4 revisions)
- Template (extension point) (4 revisions)
- Sample population (analysis) (4 revisions)
- Site model (element type) (4 revisions)
- Generate dynamic model (analysis) (4 revisions)
- Compute differentially expressed genes using EBarrays (workflow) (4 revisions)
- Hemodynamics model (file format) (4 revisions)
- ROC-curves in overlapped ChIP-Seq peaks (analysis) (4 revisions)
- ChIP-Seq peaks clusterization (analysis) (4 revisions)
- Genes - Unigene (4 revisions)
- Construct composite modules on tracks with keynodes (analysis) (4 revisions)
- Diagram editing history (4 revisions)
- Tests (4 revisions)
- Glycan structures (4 revisions)
