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  1. BioUML wiki‏‎ (471,022 views)
  2. Landing‏‎ (209,745 views)
  3. GTRD‏‎ (155,794 views)
  4. BioUML‏‎ (106,493 views)
  5. Antimony‏‎ (93,864 views)
  6. BioUML development history‏‎ (91,976 views)
  7. Covid 19‏‎ (70,810 views)
  8. BioStore‏‎ (55,675 views)
  9. BioUML development roadmap‏‎ (55,571 views)
  10. BioUML user interface‏‎ (55,338 views)
  11. Workflow‏‎ (55,069 views)
  12. Diagram document‏‎ (51,568 views)
  13. Features‏‎ (46,125 views)
  14. Optimization examples‏‎ (45,781 views)
  15. BioNetGen‏‎ (43,976 views)
  16. Download‏‎ (35,879 views)
  17. BioUML server installation‏‎ (33,850 views)
  18. BioUML workbench‏‎ (33,328 views)
  19. BioUML web edition‏‎ (32,539 views)
  20. Simulation‏‎ (29,331 views)
  21. BioUML Development Kit‏‎ (27,510 views)
  22. GTRD statistics‏‎ (25,703 views)
  23. Enrichment analysis‏‎ (23,790 views)
  24. Creating Galaxy tool‏‎ (23,708 views)
  25. Repository pane‏‎ (23,141 views)
  26. Project‏‎ (23,101 views)
  27. GTRD Workflow‏‎ (22,991 views)
  28. GeneXplain‏‎ (22,836 views)
  29. BioUML workbench installation‏‎ (21,684 views)
  30. BioUML team‏‎ (21,361 views)
  31. Databases‏‎ (20,739 views)
  32. Information box‏‎ (20,389 views)
  33. GeneNet‏‎ (18,418 views)
  34. Correlation Analysis‏‎ (18,409 views)
  35. Biomodels‏‎ (18,005 views)
  36. Modular modeling‏‎ (17,821 views)
  37. Presentations‏‎ (17,411 views)
  38. CRC Analysis‏‎ (16,876 views)
  39. Creasemarks analysis‏‎ (16,623 views)
  40. Analysis method development‏‎ (15,783 views)
  41. Hadoop‏‎ (15,365 views)
  42. N-Glycan biosynthesis‏‎ (15,154 views)
  43. Ru.biosoft.bsa (plugin)‏‎ (14,903 views)
  44. MGL‏‎ (14,804 views)
  45. Ensembl‏‎ (14,719 views)
  46. BioUML exceptions‏‎ (14,717 views)
  47. Tests‏‎ (14,279 views)
  48. Visual modeling‏‎ (13,713 views)
  49. PASS analysis‏‎ (12,939 views)
  50. Flux balance analysis‏‎ (12,722 views)
  51. Mass Conservation Analysis‏‎ (12,600 views)
  52. Construct composite modules (analysis)‏‎ (12,587 views)
  53. BioUML server‏‎ (12,468 views)
  54. Galaxy installation‏‎ (12,390 views)
  55. Diagram type‏‎ (12,273 views)
  56. EMBL format‏‎ (12,253 views)
  57. Perspective‏‎ (12,249 views)
  58. Server ICT‏‎ (12,202 views)
  59. Metabolic Control Analysis‏‎ (12,173 views)
  60. R installation‏‎ (11,901 views)
  61. Viewpart‏‎ (11,611 views)
  62. BioUML format‏‎ (11,592 views)
  63. Flux Balance Constraint (analysis)‏‎ (11,547 views)
  64. Cross cost grid layout‏‎ (11,461 views)
  65. Rbiouml‏‎ (11,420 views)
  66. Agilent normalization (analysis)‏‎ (11,198 views)
  67. CloudMan‏‎ (11,171 views)
  68. Acknowledgements‏‎ (11,157 views)
  69. Biopath‏‎ (11,110 views)
  70. BED format‏‎ (11,072 views)
  71. Hypergeometric analysis‏‎ (11,062 views)
  72. Diagram editing history‏‎ (11,010 views)
  73. Construct composite modules on tracks (analysis)‏‎ (10,911 views)
  74. Motif quality analysis‏‎ (10,798 views)
  75. Fasta format‏‎ (10,731 views)
  76. Overall circulation model‏‎ (10,631 views)
  77. Optimization problem‏‎ (10,628 views)
  78. Quadratic Hill-climbing (analysis)‏‎ (10,432 views)
  79. New BioStore‏‎ (10,409 views)
  80. ChIPMunk (analysis)‏‎ (10,348 views)
  81. GTRD comparison‏‎ (10,208 views)
  82. Table document‏‎ (10,199 views)
  83. Force directed layout‏‎ (10,171 views)
  84. Functional classification (analysis)‏‎ (10,127 views)
  85. Adaptive simulated annealing (analysis)‏‎ (10,102 views)
  86. Effector search (analysis)‏‎ (10,039 views)
  87. ChIPHorde (analysis)‏‎ (10,008 views)
  88. Regulator search (analysis)‏‎ (9,839 views)
  89. BioUML installation‏‎ (9,818 views)
  90. Defines.js‏‎ (9,818 views)
  91. Graph search‏‎ (9,784 views)
  92. Hierarchical layout‏‎ (9,754 views)
  93. BioBlend‏‎ (9,688 views)
  94. Transplorer‏‎ (9,607 views)
  95. Repository pane toolbar‏‎ (9,487 views)
  96. Biouml.plugins.gtrd (plugin)‏‎ (9,486 views)
  97. Lucene indexes creation‏‎ (9,472 views)
  98. Meta analysis‏‎ (9,458 views)
  99. Search tools‏‎ (9,416 views)
  100. Reactions Analysis‏‎ (9,375 views)
  101. Galaxy cloud‏‎ (9,307 views)
  102. Gene Ontology‏‎ (9,286 views)
  103. GenBank format‏‎ (9,260 views)
  104. Copy folder (analysis)‏‎ (9,198 views)
  105. Simulation analysis‏‎ (9,196 views)
  106. Site search on track (analysis)‏‎ (9,147 views)
  107. Install TRANSFAC(R) database (analysis)‏‎ (9,094 views)
  108. Composite module to proteins (analysis)‏‎ (9,065 views)
  109. GLBSOLVE (analysis)‏‎ (9,008 views)
  110. Filter table (analysis)‏‎ (8,993 views)
  111. Geneways‏‎ (8,963 views)
  112. SIF (file format)‏‎ (8,961 views)
  113. Sensitivity Analysis‏‎ (8,913 views)
  114. Diagram (element type)‏‎ (8,881 views)
  115. DiChIPMunk (analysis)‏‎ (8,848 views)
  116. TRRD‏‎ (8,844 views)
  117. Ru.biosoft.access (plugin)‏‎ (8,837 views)
  118. DiChIPHorde (analysis)‏‎ (8,774 views)
  119. Bowtie (analysis)‏‎ (8,752 views)
  120. Gene features (analysis)‏‎ (8,727 views)
  121. Apply state to diagram (analysis)‏‎ (8,705 views)
  122. Compare site models (analysis)‏‎ (8,693 views)
  123. Using R in BioUML‏‎ (8,689 views)
  124. Compare Experiments (analysis)‏‎ (8,683 views)
  125. Wiggle format‏‎ (8,609 views)
  126. Affymetrix normalization (analysis)‏‎ (8,592 views)
  127. BioNetGen language format‏‎ (8,544 views)
  128. Gene Transfer Format‏‎ (8,541 views)
  129. Breakdancer output (file format)‏‎ (8,539 views)
  130. Virtual rat‏‎ (8,478 views)
  131. Repository‏‎ (8,462 views)
  132. Annotate track with genes (analysis)‏‎ (8,441 views)
  133. Modular model of the human CVS v.1‏‎ (8,370 views)
  134. Descrete events‏‎ (8,368 views)
  135. Image file‏‎ (8,352 views)
  136. SBML (file format)‏‎ (8,337 views)
  137. Add expression values (analysis)‏‎ (8,294 views)
  138. Servers‏‎ (8,290 views)
  139. CNVnator genotype output (file format)‏‎ (8,289 views)
  140. Chromosome enrichment (analysis)‏‎ (8,215 views)
  141. Using Galaxy in BioUML‏‎ (8,182 views)
  142. Preprocess raw reads (analysis)‏‎ (8,166 views)
  143. Create DAS track (analysis)‏‎ (8,139 views)
  144. Polynomial Regression analysis‏‎ (8,138 views)
  145. Gene set to track (analysis)‏‎ (8,137 views)
  146. Convert table to track (analysis)‏‎ (8,078 views)
  147. Create IPS model (analysis)‏‎ (8,070 views)
  148. ChIP-seq peak profile (analysis)‏‎ (8,068 views)
  149. Cluster analysis by K-means (analysis)‏‎ (8,061 views)
  150. Ru.biosoft.proteome (plugin)‏‎ (8,022 views)
  151. Cluster by shortest path (analysis)‏‎ (8,018 views)
  152. Annotate table (analysis)‏‎ (8,017 views)
  153. GeneXplain GmbH‏‎ (7,997 views)
  154. Read counter (analysis)‏‎ (7,980 views)
  155. Convert table (analysis)‏‎ (7,973 views)
  156. Building Flux Balance DataTable (analysis)‏‎ (7,971 views)
  157. HTML file‏‎ (7,898 views)
  158. Ensembl installation‏‎ (7,896 views)
  159. Genome coverage (analysis)‏‎ (7,831 views)
  160. Text file‏‎ (7,822 views)
  161. Export element (analysis)‏‎ (7,750 views)
  162. Join tracks (analysis)‏‎ (7,742 views)
  163. General Feature Format‏‎ (7,739 views)
  164. Change profile cutoffs (analysis)‏‎ (7,708 views)
  165. MicroRNA aligner (analysis)‏‎ (7,693 views)
  166. Evolution strategy (SRES) (analysis)‏‎ (7,681 views)
  167. Ru.biosoft.analysis (plugin)‏‎ (7,681 views)
  168. Cellular genetic algorithm (analysis)‏‎ (7,680 views)
  169. Analysis of Cis-Regulatory Modules (analysis)‏‎ (7,602 views)
  170. Interval format‏‎ (7,600 views)
  171. Grid layout‏‎ (7,588 views)
  172. Tools Comparison 2022‏‎ (7,571 views)
  173. Create folder (analysis)‏‎ (7,552 views)
  174. Linear Shifted Model (analysis)‏‎ (7,550 views)
  175. Institute of Systems Biology‏‎ (7,541 views)
  176. Particle swarm optimization (analysis)‏‎ (7,541 views)
  177. Process track with sites (analysis)‏‎ (7,536 views)
  178. Filter one track by another (analysis)‏‎ (7,496 views)
  179. Biouml.plugins.ensembl (plugin)‏‎ (7,466 views)
  180. Install TRANSPATH(R) database (analysis)‏‎ (7,454 views)
  181. Disease - MeSH‏‎ (7,390 views)
  182. Construct IPS CisModule (analysis)‏‎ (7,375 views)
  183. Convert site models to proteins (analysis)‏‎ (7,375 views)
  184. Extend network (analysis)‏‎ (7,315 views)
  185. Biouml.plugins.bionetgen (plugin)‏‎ (7,304 views)
  186. Create profile from gene table (analysis)‏‎ (7,270 views)
  187. Biouml.plugins.cma (plugin)‏‎ (7,250 views)
  188. Biouml.workbench (plugin)‏‎ (7,238 views)
  189. GO installation‏‎ (7,237 views)
  190. Join several tables (analysis)‏‎ (7,206 views)
  191. Convert table via homology (analysis)‏‎ (7,196 views)
  192. Filter track by condition (analysis)‏‎ (7,176 views)
  193. SED-ML file‏‎ (7,172 views)
  194. Heterozygous site caller (analysis)‏‎ (7,166 views)
  195. Gene overlap statistics (analysis)‏‎ (7,133 views)
  196. Create Match model (analysis)‏‎ (7,130 views)
  197. Generic file‏‎ (7,105 views)
  198. Join table (analysis)‏‎ (7,101 views)
  199. Ru.biosoft.table (plugin)‏‎ (7,026 views)
  200. Diagram view part (extension point)‏‎ (6,982 views)
  201. Nonlinear Model (analysis)‏‎ (6,960 views)
  202. VCF format‏‎ (6,903 views)
  203. Create weight matrix model (analysis)‏‎ (6,859 views)
  204. SDE model (analysis)‏‎ (6,836 views)
  205. Biouml.plugins.bindingregions (plugin)‏‎ (6,803 views)
  206. Gene expression prediction‏‎ (6,748 views)
  207. SAM or BAM alignment file‏‎ (6,736 views)
  208. Merge track statistics (analysis)‏‎ (6,724 views)
  209. Steady State (analysis)‏‎ (6,707 views)
  210. HumanSim‏‎ (6,701 views)
  211. Orthogonal layout‏‎ (6,691 views)
  212. Fastq format‏‎ (6,664 views)
  213. Biouml.plugins.bkl (plugin)‏‎ (6,656 views)
  214. Matching BioHub‏‎ (6,646 views)
  215. Biouml.plugins.cellml (plugin)‏‎ (6,585 views)
  216. Save hits (analysis)‏‎ (6,520 views)
  217. SNP matching (analysis)‏‎ (6,507 views)
  218. Biouml.plugins.chipmunk (plugin)‏‎ (6,458 views)
  219. Site distribution (analysis)‏‎ (6,444 views)
  220. Genes - GenBank‏‎ (6,437 views)
  221. Venn diagrams (analysis)‏‎ (6,430 views)
  222. IPS motif discovery (analysis)‏‎ (6,419 views)
  223. 1-dimensional arterial tree model‏‎ (6,393 views)
  224. Illumina normalization (analysis)‏‎ (6,392 views)
  225. Modular model of the human CVS v.2‏‎ (6,341 views)
  226. Ru.biosoft.galaxy (plugin)‏‎ (6,329 views)
  227. Ru.biosoft.server (plugin)‏‎ (6,313 views)
  228. Mutation effect (analysis)‏‎ (6,289 views)
  229. Analyze promoters (TRANSFAC(R)) (workflow)‏‎ (6,267 views)
  230. Biouml.plugins.pass (plugin)‏‎ (6,205 views)
  231. Script viewpart‏‎ (6,169 views)
  232. Image (element type)‏‎ (6,165 views)
  233. Fold-Change calculation (analysis)‏‎ (6,119 views)
  234. Genes - Ensembl‏‎ (6,097 views)
  235. CloudBioLinux‏‎ (6,093 views)
  236. Biouml.plugins.creasemarks (plugin)‏‎ (6,081 views)
  237. Ru.biosoft.workbench (plugin)‏‎ (6,072 views)
  238. Biouml.plugins.das (plugin)‏‎ (6,061 views)
  239. Run MACS 1.3.7 on ChiP-Seq (analysis)‏‎ (6,059 views)
  240. Save network (analysis)‏‎ (6,053 views)
  241. Join diagrams (analysis)‏‎ (6,039 views)
  242. JVODE‏‎ (6,015 views)
  243. Method (extension point)‏‎ (6,006 views)
  244. Upload from FTP (analysis)‏‎ (5,976 views)
  245. SDF file‏‎ (5,975 views)
  246. Biouml.plugins.enrichment (plugin)‏‎ (5,963 views)
  247. Collaborative diagram editing‏‎ (5,949 views)
  248. Biouml.plugins.fbc (plugin)‏‎ (5,899 views)
  249. Biouml.plugins.endonet (plugin)‏‎ (5,894 views)
  250. Proteins - IPI‏‎ (5,846 views)

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