GTRD statistics

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Currently GTRD (v17.11) indexes 12168 ChIP-seq experiments on sequence specific transcription factors for human, mouse and rat. Some of the experiments indexed in GTRD were not processed by our unified workflow for different reasons, so such experiments only present in the GTRD metadata part but not in the peaks and clusters part.

Contents

Summary of ChIP-seq experiments

Species Indexed ChIP-seq experiments Indexed control ChIP-seq experiments Processed ChIP-seq experiments Processed control ChIP-seq experiments
Human 5143 1676 4236 1367
Mouse 3751 1501 3488 1327
Rat 74 23 0 0
Total 8968 3200 7724 2694

Summary of transcription factors

Species Indexed transcription factors Processed transcription factors
Human 819 682
Mouse 402 384
Distinct TFClasses for Human+Mouse 900 766


Top 10 transcription factors

Transcription Factor Number of ChIP-seq experiments
CTCF 635
ERα 286
AR 275
c-Myc 204
PU.1 194
p65 158
C/EBPβ 152
GR 147
FOXA1 141
p53 119

Data summary

Data type Count
ChIP-seq reads 508 023 543 763
Reads aligned 335 707 127 761
ChIP-seq peaks 961 923 622
Clusters 527 498 674
Metaclusters 70 338 813
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