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- (hist) Transplorer [3,424 bytes]
- (hist) BioNetGen [3,387 bytes]
- (hist) Evolution strategy (SRES) (analysis) [3,357 bytes]
- (hist) Server ICT [3,354 bytes]
- (hist) Limma (analysis) [3,321 bytes]
- (hist) Steady State (analysis) [3,278 bytes]
- (hist) Construct composite modules on tracks (without site search) (analysis) [3,253 bytes]
- (hist) Biouml.plugins.gtrd (plugin) [3,205 bytes]
- (hist) BED format [3,167 bytes]
- (hist) Classification analysis advanced (analysis) [3,143 bytes]
- (hist) Particle swarm optimization (analysis) [3,121 bytes]
- (hist) Glycan structures [3,097 bytes]
- (hist) Upstream analysis (TRANSFAC(R) and GeneWays) (workflow) [3,087 bytes]
- (hist) Breakdancer output (file format) [3,075 bytes]
- (hist) Biouml.plugins.ensembl (plugin) [3,071 bytes]
- (hist) to user communication [3,062 bytes]
- (hist) Flux Balance Constraint (analysis) [3,050 bytes]
- (hist) Perspective (extension point) [3,028 bytes]
- (hist) MiRNA feed forward loops (analysis) [3,002 bytes]
- (hist) Cdk (host object) [2,982 bytes]
- (hist) Sample population (analysis) [2,977 bytes]
- (hist) Key Node Sensitivity Analysis [2,974 bytes]
- (hist) Biouml.plugins.riboseq (plugin) [2,935 bytes]
- (hist) CRC Analysis [2,934 bytes]
- (hist) Construct composite modules on track (correlation) (analysis) [2,921 bytes]
- (hist) Ribo-Seq and mRNA features forming (analysis) [2,921 bytes]
- (hist) SiteAnalysis (host object) [2,919 bytes]
- (hist) Upstream analysis with feedback loop (TRANSFAC(R) and TRANSPATH(R)) (workflow) [2,899 bytes]
- (hist) Run MACS 1.4.0 on ChiP-Seq (analysis) [2,882 bytes]
- (hist) Upstream analysis (TRANSFAC(R) and TRANSPATH(R)) (workflow) [2,849 bytes]
- (hist) Continue CMA (analysis) [2,835 bytes]
- (hist) Compute differentially expressed genes using EBarrays (workflow) [2,813 bytes]
- (hist) Virtual biology [2,808 bytes]
- (hist) Biohub (extension point) [2,791 bytes]
- (hist) Treatment Simulation (analysis) [2,786 bytes]
- (hist) CellML (file format) [2,778 bytes]
- (hist) BioUML team [2,776 bytes]
- (hist) Filter table (analysis) [2,763 bytes]
- (hist) CWL [2,762 bytes]
- (hist) BioUML wiki [2,753 bytes]
- (hist) Parameter fitting (analysis) [2,734 bytes]
- (hist) Element action (extension point) [2,731 bytes]
- (hist) Convert site models to proteins (analysis) [2,730 bytes]
- (hist) Compute differentially expressed genes using Limma (workflow) [2,714 bytes]
- (hist) Tree-table (element type) [2,698 bytes]
- (hist) Types (extension point) [2,599 bytes]
- (hist) Quantification of RNA-seq with Cufflinks for multiple BAM files (workflow) [2,588 bytes]
- (hist) Tabular (file format) [2,588 bytes]
- (hist) Model (host object) [2,586 bytes]
- (hist) Apply events (analysis) [2,582 bytes]
- (hist) Beans (extension point) [2,577 bytes]
- (hist) Modular model of the human CVS v.2 [2,557 bytes]
- (hist) Track statistics (analysis) [2,541 bytes]
- (hist) Generate workflow from annotation diagram (analysis) [2,529 bytes]
- (hist) Simulation [2,528 bytes]
- (hist) Fasta format [2,520 bytes]
- (hist) Matrix derivation (analysis) [2,518 bytes]
- (hist) Virtual rat [2,492 bytes]
- (hist) Document factory (extension point) [2,440 bytes]
- (hist) Biopath [2,429 bytes]
- (hist) Correlation Analysis [2,428 bytes]
- (hist) Ensembl installation [2,424 bytes]
- (hist) Download [2,420 bytes]
- (hist) Heatmap (analysis) [2,419 bytes]
- (hist) Headless BioUML [2,393 bytes]
- (hist) Repository [2,393 bytes]
- (hist) Microarray (host object) [2,388 bytes]
- (hist) Hypergeometric analysis for multiple inputs (workflow) [2,376 bytes]
- (hist) Agilent normalization (analysis) [2,369 bytes]
- (hist) Remove overlapping sites (analysis) [2,362 bytes]
- (hist) Cluster analysis by K-means (analysis) [2,362 bytes]
- (hist) Find genome variants and indels from RNA-seq (workflow) [2,357 bytes]
- (hist) Quantification of RNA-seq with Cufflinks (with de-novo assembly) for FASTQ files (workflow) [2,322 bytes]
- (hist) Find longest connected chains (analysis) [2,312 bytes]
- (hist) LRPath (analysis) [2,270 bytes]
- (hist) Analyze SNP list (GTRD) (workflow) [2,267 bytes]
- (hist) Analyze SNP list (TRANSFAC(R)) (workflow) [2,262 bytes]
- (hist) Systems biology - model import 02 [2,253 bytes]
- (hist) Genome Browser json [2,251 bytes]
- (hist) Graph search [2,247 bytes]
- (hist) Compute differentially expressed genes (Affymetrix probes) (workflow) [2,236 bytes]
- (hist) Compute differentially expressed genes (Agilent Tox probes) (workflow) [2,230 bytes]
- (hist) SDF file [2,226 bytes]
- (hist) Danon et al. Covid-19 transmission in England [2,221 bytes]
- (hist) Compute differentially expressed genes (Illumina probes) (workflow) [2,214 bytes]
- (hist) Compute differentially expressed genes (Agilent probes) (workflow) [2,212 bytes]
- (hist) Biomodels [2,184 bytes]
- (hist) BioUML development roadmap [2,184 bytes]
- (hist) Cellular genetic algorithm (analysis) [2,184 bytes]
- (hist) Export (extension point) [2,178 bytes]
- (hist) Westerhoff and Kolodkin 2020 COVID19 model [2,176 bytes]
- (hist) Reactome [2,176 bytes]
- (hist) Mutation effect on sites advanced (analysis) [2,175 bytes]
- (hist) Normalize Illumina experiment and control (analysis) [2,171 bytes]
- (hist) ChIP-seq Quality control analysis [2,155 bytes]
- (hist) Meta analysis [2,146 bytes]
- (hist) Analyze any DNA sequence (TRANSFAC(R)) (workflow) [2,130 bytes]
- (hist) Bowtie (analysis) [2,127 bytes]
- (hist) Analyze any DNA sequence for site enrichment (TRANSFAC(R)) (workflow) [2,118 bytes]
- (hist) BioBlend [2,115 bytes]
- (hist) Mapping to ontology - select a classification (Multiple Gene tables) (workflow) [2,114 bytes]
- (hist) Biouml.plugins.keynodes (plugin) [2,112 bytes]
- (hist) Analyze promoters (GTRD) (workflow) [2,111 bytes]
- (hist) Steady State Examples [2,103 bytes]
- (hist) Gene expression prediction [2,103 bytes]
- (hist) PCA (analysis) [2,096 bytes]
- (hist) Report generator for quality control analysis [2,096 bytes]
- (hist) GeneXplain [2,096 bytes]
- (hist) Create random track (analysis) [2,093 bytes]
- (hist) Manual parameter fitting [2,092 bytes]
- (hist) Biouml.plugins.genomeenhancer (plugin) [2,086 bytes]
- (hist) Quantification of RNA-seq with Cufflinks (no de-novo assembly) for FASTQ files (workflow) [2,085 bytes]
- (hist) Join two tables (analysis) [2,081 bytes]
- (hist) JVODE [2,080 bytes]
- (hist) Analyze promoters (TRANSFAC(R)) (workflow) [2,074 bytes]
- (hist) Parameter identifiability (table) (analysis) [2,069 bytes]
- (hist) BioGears [2,062 bytes]
- (hist) Compute differentially expressed genes using Hypergeometric test (Affymetrix probes) (workflow) [2,062 bytes]
- (hist) Annotate table (analysis) [2,054 bytes]
- (hist) Mapping to GO ontologies and comparison for two gene sets (workflow) [2,042 bytes]
- (hist) Transformer (extension point) [2,041 bytes]
- (hist) Identify enriched composite modules in promoters (GTRD) (workflow) [2,040 bytes]
- (hist) Create transcript region track (analysis) [2,039 bytes]
- (hist) Run MACS 1.3.7 on ChiP-Seq (analysis) [2,027 bytes]
- (hist) Affymetrix normalization (analysis) [2,023 bytes]
- (hist) Find regulatory regions (analysis) [2,022 bytes]
- (hist) Find regulatory regions with mutations (analysis) [2,006 bytes]
- (hist) Sites Motifs Analysis [2,006 bytes]
- (hist) GTRD comparison [2,003 bytes]
- (hist) PharmML [2,000 bytes]
- (hist) Compute differentially expressed genes using Hypergeometric test (Illumina probes) (workflow) [1,993 bytes]
- (hist) Mapping to ontologies (TRANSPATH(R)) (workflow) [1,992 bytes]
- (hist) Compute differentially expressed genes using Hypergeometric test (Agilent probes) (workflow) [1,990 bytes]
- (hist) Moved class (extension point) [1,971 bytes]
- (hist) Hash parameters [1,970 bytes]
- (hist) Pharmaceutical Compounds analysis [1,969 bytes]
- (hist) Join table (analysis) [1,969 bytes]
- (hist) Find gene fusions from RNA-seq (workflow) [1,965 bytes]
- (hist) Modular model of the human CVS v.1 [1,953 bytes]
- (hist) Method (extension point) [1,951 bytes]
- (hist) Normalize Affymetrix experiment and control (analysis) [1,948 bytes]
- (hist) Collaborative diagram editing [1,947 bytes]
- (hist) Table (element type) [1,946 bytes]
- (hist) Ru.biosoft.access (plugin) [1,929 bytes]
- (hist) Genome browser [1,915 bytes]
- (hist) Quasi-steady-state analysis example [1,904 bytes]
- (hist) GLBSOLVE (analysis) [1,887 bytes]
- (hist) Composite module to proteins (analysis) [1,886 bytes]
- (hist) MEALR (tracks) (analysis) [1,874 bytes]
- (hist) Mutation effect on sites (analysis) [1,874 bytes]
- (hist) Bsa (host object) [1,874 bytes]
- (hist) RNA-Seq analysis [1,860 bytes]
- (hist) Mixture of normal components (analysis) [1,853 bytes]
- (hist) Track (element type) [1,848 bytes]
- (hist) Genome Browser iframe [1,844 bytes]
- (hist) Quality control analysis [1,826 bytes]
- (hist) Normalize Agilent experiment and control (analysis) [1,823 bytes]
- (hist) Select keynodes with top targets (analysis) [1,819 bytes]
- (hist) Gene set enrichment analysis HumanPSD (Agilent probes) (workflow) [1,814 bytes]
- (hist) Mapping to ontology - select a classification (2 Gene tables) (workflow) [1,810 bytes]
- (hist) Import (extension point) [1,805 bytes]
- (hist) Mapping to ontology - select a classification (Gene table) (workflow) [1,803 bytes]
- (hist) BuildProfileModel (analysis) [1,800 bytes]
- (hist) Find master regulators for multiple gene sets (TRANSPATH(R)) (workflow) [1,799 bytes]
- (hist) Transform (host object) [1,798 bytes]
- (hist) Method description HTML file [1,797 bytes]
- (hist) HumanSim [1,789 bytes]
- (hist) Reference type (extension point) [1,787 bytes]
- (hist) Calculate keynodes ranks (analysis) [1,784 bytes]
- (hist) Calculate CMA regulation (analysis) [1,780 bytes]
- (hist) Modular modeling [1,780 bytes]
- (hist) Overall circulation model [1,778 bytes]
- (hist) GTEX Mutation effect on sites (analysis) [1,773 bytes]
- (hist) Cistrom construction (analysis) [1,773 bytes]
- (hist) Mass Conservation Analysis [1,773 bytes]
- (hist) SPAdes [1,764 bytes]
- (hist) SNP matching (analysis) [1,759 bytes]
- (hist) Calculate weighted mutation score (analysis) [1,757 bytes]
- (hist) Fantom analysis [1,754 bytes]
- (hist) Sensitivity Analysis [1,754 bytes]
- (hist) Convert site search summary (analysis) [1,753 bytes]
- (hist) Product [1,750 bytes]
- (hist) Analyze any DNA sequence (GTRD) (workflow) [1,748 bytes]
- (hist) Data (host object) [1,747 bytes]
- (hist) PredictStartSites (analysis) [1,744 bytes]
- (hist) ChIPHorde (analysis) [1,739 bytes]
- (hist) MSAT (analysis) [1,738 bytes]
- (hist) Stoichiometric Matrix (analysis) [1,737 bytes]
- (hist) Find master regulators for multiple gene sets (GeneWays) (workflow) [1,735 bytes]
- (hist) Effector search (analysis) [1,729 bytes]
- (hist) Gene set enrichment analysis (Illumina probes) (workflow) [1,728 bytes]
- (hist) Gene set enrichment analysis (Affymetrix probes) (workflow) [1,723 bytes]
- (hist) DiChIPHorde (analysis) [1,721 bytes]
- (hist) Galaxy installation [1,705 bytes]
- (hist) Metabolic Control Analysis [1,702 bytes]
- (hist) Analyze miRNA target enrichment (analysis) [1,686 bytes]
- (hist) Prediction of TF-binding sites of given TF (analysis) [1,686 bytes]
- (hist) Visual modeling [1,683 bytes]
- (hist) Ensembl [1,682 bytes]
- (hist) VCF format [1,678 bytes]
- (hist) Find common effectors for multiple gene sets (GeneWays) (workflow) [1,663 bytes]
- (hist) Find master regulators in networks with context genes (TRANSPATH(R)) (workflow) [1,651 bytes]
- (hist) Mapping to ontologies for multiple gene sets (HumanPSD(TM)) (workflow) [1,637 bytes]
- (hist) Mapping to ontologies for multiple gene sets (TRANSPATH(R)) (workflow) [1,637 bytes]
- (hist) ROC-curves in clusterized peaks (analysis) [1,636 bytes]
- (hist) Tools Comparison [1,630 bytes]
- (hist) Sites genome location (analysis) [1,628 bytes]
- (hist) Biouml.workbench (plugin) [1,626 bytes]
- (hist) Find shortest path between two sets (analysis) [1,620 bytes]
- (hist) Analyze any DNA sequence for site enrichment (GTRD) (workflow) [1,619 bytes]
- (hist) Find genome variants and indels from full-genome NGS (workflow) [1,613 bytes]
- (hist) ROC curves for best sites union (analysis) [1,612 bytes]
- (hist) Gene set enrichment analysis HumanPSD (Affymetrix probes) (workflow) [1,610 bytes]
- (hist) Gene set enrichment analysis HumanPSD (Illumina probes) (workflow) [1,602 bytes]
- (hist) ChIP-Seq - Identify and classify target genes (workflow) [1,597 bytes]
- (hist) ROC-curves in overlapped ChIP-Seq peaks (analysis) [1,596 bytes]
- (hist) Regression analysis [1,595 bytes]
- (hist) Identify enriched motifs in promoters (GTRD) (workflow) [1,592 bytes]
- (hist) Create matrix by mixture of normal components (analysis) [1,579 bytes]
- (hist) Diagram view part (extension point) [1,578 bytes]
- (hist) Site search on gene set (analysis) [1,576 bytes]
- (hist) Gene set enrichment analysis (Agilent probes) (workflow) [1,575 bytes]
- (hist) TF binding sites prediction in genome or track (analysis) [1,572 bytes]
- (hist) Merge binding regions for cell-lines (analysis) [1,572 bytes]
- (hist) Find 3 master regulators in networks with context genes (TRANSPATH(R)) (workflow) [1,571 bytes]
- (hist) Venn diagrams (analysis) [1,571 bytes]
- (hist) Intersect tracks (analysis) [1,569 bytes]
- (hist) QUAST [1,569 bytes]
- (hist) Tutorials [1,567 bytes]
- (hist) Module type (extension point) [1,562 bytes]
- (hist) Geneways [1,551 bytes]
- (hist) Identical best site ROC-curves (analysis) [1,549 bytes]
- (hist) ChIPMunk (analysis) [1,549 bytes]
- (hist) Transcriptome mappability (analysis) [1,544 bytes]
- (hist) Script type (extension point) [1,534 bytes]
- (hist) Biouml.plugins.cma (plugin) [1,533 bytes]
- (hist) ROC-curves in grouped peaks (analysis) [1,532 bytes]
- (hist) DiChIPMunk (analysis) [1,530 bytes]
- (hist) CloudBioLinux [1,528 bytes]
- (hist) Mutations to genes with weights (analysis) [1,525 bytes]
- (hist) ComputeTranscriptProfile (analysis) [1,523 bytes]
- (hist) Find 10 master regulators in networks (TRANSPATH(R)) (workflow) [1,520 bytes]
- (hist) Search tools [1,514 bytes]
- (hist) Functional classification by diagrams (analysis) [1,512 bytes]
- (hist) Cis-module sets near given genes (analysis) [1,503 bytes]
- (hist) Look and feel (extension point) [1,500 bytes]
- (hist) Perspective [1,487 bytes]
- (hist) Annotation (extension point) [1,487 bytes]
- (hist) Correlations of best sites (analysis) [1,476 bytes]
- (hist) Biouml.plugins.affymetrix (plugin) [1,474 bytes]