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- Com.developmentontheedge.util (plugin) (208 bytes) (fully protected) (Protection log)
- Ru.biosoft.access.search (plugin) (188 bytes) (fully protected) (Protection log)
- Ru.biosoft.analysis.optimization (plugin) (1,016 bytes) (fully protected) (Protection log)
- Ru.biosoft.access (plugin) (1,929 bytes) (fully protected) (Protection log)
- Ru.biosoft.analysis (plugin) (5,391 bytes) (fully protected) (Protection log)
- Ru.biosoft.bsa (plugin) (6,983 bytes) (fully protected) (Protection log)
- Ru.biosoft.galaxy (plugin) (493 bytes) (fully protected) (Protection log)
- Ru.biosoft.graph (plugin) (196 bytes) (fully protected) (Protection log)
- Ru.biosoft.math (plugin) (196 bytes) (fully protected) (Protection log)
- Ru.biosoft.plugins.javascript (plugin) (726 bytes) (fully protected) (Protection log)
- Ru.biosoft.plugins.jri (plugin) (327 bytes) (fully protected) (Protection log)
- Ru.biosoft.server.tomcat (plugin) (198 bytes) (fully protected) (Protection log)
- Ru.biosoft.proteome (plugin) (424 bytes) (fully protected) (Protection log)
- Ru.biosoft.server.servlets (plugin) (423 bytes) (fully protected) (Protection log)
- Ru.biosoft.server (plugin) (372 bytes) (fully protected) (Protection log)
- Ru.biosoft.services (plugin) (183 bytes) (fully protected) (Protection log)
- Ru.biosoft.table (plugin) (698 bytes) (fully protected) (Protection log)
- Ru.biosoft.templates (plugin) (389 bytes) (fully protected) (Protection log)
- Ru.biosoft.treetable (plugin) (187 bytes) (fully protected) (Protection log)
- Ru.biosoft.workbench (plugin) (675 bytes) (fully protected) (Protection log)
- Ru.biosoft.works (plugin) (175 bytes) (fully protected) (Protection log)
- Biouml.plugins.simulation-test (plugin) (207 bytes) (fully protected) (Protection log)
- Category:Autosome.Ru plugins (90 bytes) (fully protected) (Protection log)
- Category:ISB plugins (107 bytes) (fully protected) (Protection log)
- Category:GeneXplain plugins (94 bytes) (fully protected) (Protection log)
- Category:DevelopmentOnTheEdge.com plugins (103 bytes) (fully protected) (Protection log)
- Template:Element types (1,493 bytes) (fully protected) (Protection log)
- Probes - Agilent (455 bytes) (fully protected) (Protection log)
- Site models - GTRD (277 bytes) (fully protected) (Protection log)
- Genes - Ensembl (820 bytes) (fully protected) (Protection log)
- Hormone - EndoNet (301 bytes) (fully protected) (Protection log)
- Proteins - Transpath peptides (478 bytes) (fully protected) (Protection log)
- Unspecified (reference type) (373 bytes) (fully protected) (Protection log)
- Probes - Affymetrix (843 bytes) (fully protected) (Protection log)
- Cell - EndoNet (292 bytes) (fully protected) (Protection log)
- Genes - Transpath (425 bytes) (fully protected) (Protection log)
- Proteins - Transpath modified forms (506 bytes) (fully protected) (Protection log)
- Proteins - Transpath (443 bytes) (fully protected) (Protection log)
- Proteins - EndoNet (406 bytes) (fully protected) (Protection log)
- ChIP-seq peaks - GTRD (272 bytes) (fully protected) (Protection log)
- Proteins - Transpath complexes (498 bytes) (fully protected) (Protection log)
- Categories - GTRD (530 bytes) (fully protected) (Protection log)
- Pathways - Transpath (438 bytes) (fully protected) (Protection log)
- Transcripts - Ensembl (856 bytes) (fully protected) (Protection log)
- Proteins - Reactome (684 bytes) (fully protected) (Protection log)
- Proteins - GenBank (722 bytes) (fully protected) (Protection log)
- Proteins - UniProt (879 bytes) (fully protected) (Protection log)
- Matrices - GTRD (369 bytes) (fully protected) (Protection log)
- Isoforms - GTRD (270 bytes) (fully protected) (Protection log)
- Probes (reference type) (286 bytes) (fully protected) (Protection log)
- Genes - Illumina (393 bytes) (fully protected) (Protection log)
- Transcripts - Illumina (429 bytes) (fully protected) (Protection log)
- Genes - GenBank (759 bytes) (fully protected) (Protection log)
- Disease - MeSH (939 bytes) (fully protected) (Protection log)
- Matrices - TRANSFAC (405 bytes) (fully protected) (Protection log)
- Genes (reference type) (283 bytes) (fully protected) (Protection log)
- Proteins - BKL (406 bytes) (fully protected) (Protection log)
- Proteins - IPI (824 bytes) (fully protected) (Protection log)
- SNP (reference type) (253 bytes) (fully protected) (Protection log)
- Proteins - RefSeq (795 bytes) (fully protected) (Protection log)
- Proteins - Transfac (398 bytes) (fully protected) (Protection log)
- Genes - Unigene (441 bytes) (fully protected) (Protection log)
- Probes - Illumina (459 bytes) (fully protected) (Protection log)
- Proteins - GTRD (372 bytes) (fully protected) (Protection log)
- Pathways - Reactome (421 bytes) (fully protected) (Protection log)
- Matrices (reference type) (260 bytes) (fully protected) (Protection log)
- Genes - Gene symbol (455 bytes) (fully protected) (Protection log)
- Transcripts (reference type) (301 bytes) (fully protected) (Protection log)
- Genes - Entrez (835 bytes) (fully protected) (Protection log)
- Proteins - Ensembl (838 bytes) (fully protected) (Protection log)
- Proteins (reference type) (292 bytes) (fully protected) (Protection log)
- Transcripts - RefSeq (813 bytes) (fully protected) (Protection log)
- Genes - BKL (388 bytes) (fully protected) (Protection log)
- Affymetrix normalization (analysis) (2,023 bytes) (fully protected) (Protection log)
- Add expression values (analysis) (3,483 bytes) (fully protected) (Protection log)
- Adaptive simulated annealing (analysis) (1,341 bytes) (fully protected) (Protection log)
- Biohub (host object) (923 bytes) (fully protected) (Protection log)
- R (host object) (521 bytes) (fully protected) (Protection log)
- Bsa (host object) (1,874 bytes) (fully protected) (Protection log)
- Chipmunk (host object) (876 bytes) (fully protected) (Protection log)
- Cdk (host object) (2,982 bytes) (fully protected) (Protection log)
- Das (host object) (416 bytes) (fully protected) (Protection log)
- Data (host object) (1,747 bytes) (fully protected) (Protection log)
- Enrichment (host object) (1,033 bytes) (fully protected) (Protection log)
- DataFilter (host object) (690 bytes) (fully protected) (Protection log)
- Ensembl (host object) (398 bytes) (fully protected) (Protection log)
- Galaxy (host object) (276 bytes) (fully protected) (Protection log)
- Ftp (host object) (462 bytes) (fully protected) (Protection log)
- Microarray (host object) (2,388 bytes) (fully protected) (Protection log)
- ModelReduction (host object) (421 bytes) (fully protected) (Protection log)
- Model (host object) (2,586 bytes) (fully protected) (Protection log)
- Network (host object) (531 bytes) (fully protected) (Protection log)
- Normalize (host object) (857 bytes) (fully protected) (Protection log)
- Optimization (host object) (1,319 bytes) (fully protected) (Protection log)
- Sbml (host object) (569 bytes) (fully protected) (Protection log)
- Report (host object) (394 bytes) (fully protected) (Protection log)
- Sbw (host object) (529 bytes) (fully protected) (Protection log)
- SimulationEngine (host object) (1,246 bytes) (fully protected) (Protection log)
- SiteAnalysis (host object) (2,919 bytes) (fully protected) (Protection log)
- Table (host object) (347 bytes) (fully protected) (Protection log)
- Transform (host object) (1,798 bytes) (fully protected) (Protection log)
- Proteins - PDB (282 bytes) (fully protected) (Protection log)
- Structures - PDB (276 bytes) (fully protected) (Protection log)
- Category:Softberry plugins (94 bytes) (fully protected) (Protection log)
- Peaks to matrices (workflow) (593 bytes) (fully protected) (Protection log)
- Reads to matrices (workflow) (717 bytes) (fully protected) (Protection log)
- Category:Autosome.Ru workflows (94 bytes) (fully protected) (Protection log)
- Analyze SNP list (GTRD) (workflow) (2,267 bytes) (fully protected) (Protection log)
- Analyze SNP list (TRANSFAC(R)) (workflow) (2,262 bytes) (fully protected) (Protection log)
- Gene set enrichment analysis - select a classification (Gene table) (workflow) (1,405 bytes) (fully protected) (Protection log)
- Probes - Affymetrix ST (807 bytes) (fully protected) (Protection log)
- Template:Reference types (8,291 bytes) (fully protected) (Protection log)
- Template:Web tree actions (2,240 bytes) (fully protected) (Protection log)
- Template:Web toolbar actions (2,211 bytes) (fully protected) (Protection log)
- Binding regions summary (analysis) (1,082 bytes) (fully protected) (Protection log)
- Gathering genome statistics (analysis) (1,294 bytes) (fully protected) (Protection log)
- Merge binding regions for cell-lines (analysis) (1,572 bytes) (fully protected) (Protection log)
- Non-merged ChIP-Seq tracks summary (analysis) (1,320 bytes) (fully protected) (Protection log)
- Category:Binding regions (analyses group) (97 bytes) (fully protected) (Protection log)
- Cis-module identification (analysis) (894 bytes) (fully protected) (Protection log)
- Count olig frequencies (analysis) (906 bytes) (fully protected) (Protection log)
- Create matrix by mixture of normal components (analysis) (1,579 bytes) (fully protected) (Protection log)
- Mixture of normal components (analysis) (1,853 bytes) (fully protected) (Protection log)
- Distinct TF classes (analysis) (1,279 bytes) (fully protected) (Protection log)
- IPS prediction (analysis) (1,250 bytes) (fully protected) (Protection log)
- IPS ROC-curves (analysis) (1,467 bytes) (fully protected) (Protection log)
- Categories - ExPASy (398 bytes) (fully protected) (Protection log)
- Install ExPASy (analysis) (449 bytes) (fully protected) (Protection log)
- Biouml.plugins.expasy (plugin) (583 bytes) (fully protected) (Protection log)
- Extract ribosomal RNA (analysis) (891 bytes) (fully protected) (Protection log)
- ChIP-Seq characteristics distribution (analysis) (874 bytes) (fully protected) (Protection log)
- Biouml.plugins.antimony (plugin) (323 bytes) (fully protected) (Protection log)
- IPS-scores in SNPs (analysis) (1,173 bytes) (fully protected) (Protection log)
- SNP regions in genome (analysis) (1,191 bytes) (fully protected) (Protection log)
- SNPs in binding regions (analysis) (1,091 bytes) (fully protected) (Protection log)
- Biouml.plugins.bindingregions (plugin) (5,919 bytes) (fully protected) (Protection log)
- Common and IPS scores correlation (analysis) (1,344 bytes) (fully protected) (Protection log)
- ChIP experiment - GTRD (283 bytes) (fully protected) (Protection log)
- Proteins - NCBI (521 bytes) (fully protected) (Protection log)
- Categories - Gene ontology (539 bytes) (fully protected) (Protection log)
- Pathways (reference type) (282 bytes) (fully protected) (Protection log)
- Categories (reference type) (286 bytes) (fully protected) (Protection log)
- Enzymes - KEGG (292 bytes) (fully protected) (Protection log)
- Correlations of best sites (analysis) (1,476 bytes) (fully protected) (Protection log)
- Locations of best sites (analysis) (1,442 bytes) (fully protected) (Protection log)
- ROC curves for best sites union (analysis) (1,612 bytes) (fully protected) (Protection log)
- Enzymes - ExPASy (283 bytes) (fully protected) (Protection log)
- Clean up SQL database (analysis) (923 bytes) (fully protected) (Protection log)
- Extract RNA length (analysis) (826 bytes) (fully protected) (Protection log)
- MicroRNA finder (analysis) (1,225 bytes) (fully protected) (Protection log)
- Filter duplicate rows (analysis) (829 bytes) (fully protected) (Protection log)
- Group table rows (analysis) (664 bytes) (fully protected) (Protection log)
- Stem loop predictor (analysis) (1,017 bytes) (fully protected) (Protection log)
- GTRD statistics (4,542 bytes) (fully protected) (Protection log)
- Join GTRD Tracks (analysis) (605 bytes) (fully protected) (Protection log)
- Prepare Search by regulation (analysis) (632 bytes) (fully protected) (Protection log)
- Search binding sites (analysis) (1,081 bytes) (fully protected) (Protection log)
- KEGG (reference type) (368 bytes) (fully protected) (Protection log)
- Cluster track (analysis) (1,099 bytes) (fully protected) (Protection log)
- Color space to nucleotide (analysis) (559 bytes) (fully protected) (Protection log)
- Map Transfac sites to genome (analysis) (781 bytes) (fully protected) (Protection log)
- Perfectosape (analysis) (906 bytes) (fully protected) (Protection log)
- Antimony (file format) (446 bytes) (fully protected) (Protection log)
- Perfectosape (host object) (521 bytes) (fully protected) (Protection log)
- Biouml.plugins.perfectosape (plugin) (484 bytes) (fully protected) (Protection log)
- Analysis of Binding Regions (analysis) (3,596 bytes) (fully protected) (Protection log)
- Split fasta (analysis) (608 bytes) (fully protected) (Protection log)
- Peak finders comparison (analysis) (1,034 bytes) (fully protected) (Protection log)
- Summary on AUCs (analysis) (1,030 bytes) (fully protected) (Protection log)
- Node (host object) (601 bytes) (fully protected) (Protection log)
- Biouml.plugins.node (plugin) (317 bytes) (fully protected) (Protection log)
- Biouml.plugins.pharm (plugin) (546 bytes) (fully protected) (Protection log)
- Ru.biosoft.graphics (plugin) (197 bytes) (fully protected) (Protection log)
- Probes - Affymetrix HG-U133+ PM (559 bytes) (fully protected) (Protection log)
- Probes - Agilent Tox Array (420 bytes) (fully protected) (Protection log)
- Substances - ChEBI (730 bytes) (fully protected) (Protection log)
- Rebuild search indexes (analysis) (627 bytes) (fully protected) (Protection log)
- Blast alignment coverage (analysis) (630 bytes) (fully protected) (Protection log)
- Apply CMA model to tracks (analysis) (790 bytes) (fully protected) (Protection log)
- Create profile from site model table (analysis) (939 bytes) (fully protected) (Protection log)
- Mutation effect on sites (analysis) (1,874 bytes) (fully protected) (Protection log)
- Prepare GTF annotation (analysis) (866 bytes) (fully protected) (Protection log)
- Remove overlapping sites (analysis) (2,362 bytes) (fully protected) (Protection log)
- Transcript set to track (analysis) (974 bytes) (fully protected) (Protection log)
- CRISPR Cas9 and specific oligonucleotides (analysis) (1,296 bytes) (fully protected) (Protection log)
- Cis-module sets near given genes (analysis) (1,503 bytes) (fully protected) (Protection log)
- Convert files to tracks (analysis) (1,131 bytes) (fully protected) (Protection log)
- Filtration of predicted sites by filters (analysis) (1,307 bytes) (fully protected) (Protection log)
- ChIP-Seq peaks clusterization (analysis) (1,054 bytes) (fully protected) (Protection log)
- Identical best site ROC-curves (analysis) (1,549 bytes) (fully protected) (Protection log)
- Identification of cis-regulatory modules with given pattern of TF-classes (analysis) (1,200 bytes) (fully protected) (Protection log)
- Identification of composite elements by filters (analysis) (1,365 bytes) (fully protected) (Protection log)
- Matrix comparison (analysis) (1,319 bytes) (fully protected) (Protection log)
- Prediction of TF-binding sites of given TF (analysis) (1,686 bytes) (fully protected) (Protection log)
- ROC-curves in grouped peaks (analysis) (1,532 bytes) (fully protected) (Protection log)
- ROC-curves in clusterized peaks (analysis) (1,636 bytes) (fully protected) (Protection log)
- ROC-curves in overlapped ChIP-Seq peaks (analysis) (1,596 bytes) (fully protected) (Protection log)
- Two multivariate sample analysis (813 bytes) (fully protected) (Protection log)
- Annotate diagram (analysis) (757 bytes) (fully protected) (Protection log)
- Diagram graph compare analysis (1,347 bytes) (fully protected) (Protection log)
- Remove unobservable molecules (analysis) (804 bytes) (fully protected) (Protection log)
- Share molecules (analysis) (622 bytes) (fully protected) (Protection log)
- BioNetGen language format (9,051 bytes) (fully protected) (Protection log)
- Hemodynamics model (file format) (740 bytes) (fully protected) (Protection log)
- Add reactants (analysis) (1,276 bytes) (fully protected) (Protection log)
- ArticleTrackCreator (analysis) (750 bytes) (fully protected) (Protection log)
- CoverageCheker (analysis) (782 bytes) (fully protected) (Protection log)
- FinderArticlePoints (analysis) (829 bytes) (fully protected) (Protection log)
- ArticleComparator (analysis) (841 bytes) (fully protected) (Protection log)
- SVM (analysis) (730 bytes) (fully protected) (Protection log)
- SelectionTrustClusters (analysis) (771 bytes) (fully protected) (Protection log)
- RiboSeqExp (analysis) (780 bytes) (fully protected) (Protection log)
- Differential expression with DESeq (analysis) (857 bytes) (fully protected) (Protection log)
- RiboseqArticleResult (analysis) (581 bytes) (fully protected) (Protection log)
- Convert identifiers for multiple gene sets (workflow) (1,054 bytes) (fully protected) (Protection log)
- Quantification of RNA-seq with Cufflinks for multiple BAM files (workflow) (2,588 bytes) (fully protected) (Protection log)
- Analyze any DNA sequence (GTRD) (workflow) (1,748 bytes) (fully protected) (Protection log)
- Analyze any DNA sequence for site enrichment (GTRD) (workflow) (1,619 bytes) (fully protected) (Protection log)
- Identify enriched motifs in promoters (GTRD) (workflow) (1,592 bytes) (fully protected) (Protection log)
- Identify composite modules in promoters (TRANSFAC(R)) (workflow) (556 bytes) (fully protected) (Protection log)
- Analyze any DNA sequence for site enrichment (TRANSFAC(R)) (workflow) (2,118 bytes) (fully protected) (Protection log)
- Analyze any DNA sequence (TRANSFAC(R)) (workflow) (2,130 bytes) (fully protected) (Protection log)
- Identify enriched composite modules in promoters (TRANSFAC(R)) (workflow) (513 bytes) (fully protected) (Protection log)
- Identify enriched motifs in promoters (TRANSFAC(R)) (workflow) (541 bytes) (fully protected) (Protection log)
- ChIP-Seq - Identify and classify target genes (TRANSPATH(R)) (workflow) (708 bytes) (fully protected) (Protection log)
- Biouml.plugins.affymetrix (plugin) (1,474 bytes) (fully protected) (Protection log)
- Biouml.plugins.agilent (plugin) (367 bytes) (fully protected) (Protection log)
- Biouml.plugins.download (plugin) (487 bytes) (fully protected) (Protection log)
- Biouml.plugins.dropbox (plugin) (193 bytes) (fully protected) (Protection log)
- Biouml.plugins.googledrive (plugin) (202 bytes) (fully protected) (Protection log)
- Biouml.plugins.glycan (plugin) (181 bytes) (fully protected) (Protection log)
- Biouml.plugins.mirbase (plugin) (549 bytes) (fully protected) (Protection log)
- Biouml.plugins.riboseqArticleResult (plugin) (371 bytes) (fully protected) (Protection log)
- Biouml.plugins.riboseq (plugin) (2,935 bytes) (fully protected) (Protection log)
- Ru.biosoft.fs (plugin) (314 bytes) (fully protected) (Protection log)
- Ru.biosoft.bsa.server (plugin) (211 bytes) (fully protected) (Protection log)
- Ru.biosoft.plugins.graph (plugin) (336 bytes) (fully protected) (Protection log)
- Ru.biosoft.vm (plugin) (201 bytes) (fully protected) (Protection log)
- Category:RiboSeq (analyses group) (89 bytes) (fully protected) (Protection log)
- Category:RiboseqArticleResult (analyses group) (102 bytes) (fully protected) (Protection log)
- Probes - Affymetrix HuGene-2-1-st (551 bytes) (fully protected) (Protection log)
- Probes - Affymetrix HuGene-2-0-st (551 bytes) (fully protected) (Protection log)
- Probes - Affymetrix RaGene-2-0-st (551 bytes) (fully protected) (Protection log)
- Probes - Affymetrix miRNA-3-0 (559 bytes) (fully protected) (Protection log)
- Probes - Affymetrix miRNA-2-0 (559 bytes) (fully protected) (Protection log)
- Probes - Affymetrix miRNA-4-0 (539 bytes) (fully protected) (Protection log)
- MiRNA - miRBase (284 bytes) (fully protected) (Protection log)
- LincRNA and mRNA features (analysis) (1,073 bytes) (fully protected) (Protection log)
- Probes - Affymetrix miRNA-1-0 (559 bytes) (fully protected) (Protection log)
- Copy data element (analysis) (543 bytes) (fully protected) (Protection log)