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- Track (element type) (21 links)
- Perspective (21 links)
- Information box (20 links)
- BioUML user interface (18 links)
- Repository (18 links)
- BioUML server (18 links)
- Biouml.plugins.keynodes (plugin) (15 links)
- Table (element type) (15 links)
- Proteins (reference type) (15 links)
- Autosome.Ru (13 links)
- Databases (12 links)
- BioStore (12 links)
- Workflows (11 links)
- Document pane (11 links)
- Biouml.plugins.modelreduction (plugin) (11 links)
- Biouml.plugins.cma (plugin) (11 links)
- Genes (reference type) (11 links)
- Viewpart (11 links)
- Biouml.plugins.affymetrix (plugin) (10 links)
- Probes - Affymetrix (10 links)
- Table document (9 links)
- Category:Analyses (9 links)
- Features (9 links)
- Biouml.plugins.transpath (plugin) (9 links)
- Substances (reference type) (9 links)
- Convert table (analysis) (9 links)
- Viewparts (8 links)
- Modular modeling (8 links)
- Probes (reference type) (8 links)
- Site search on track (analysis) (7 links)
- Genome browser (7 links)
- GeneXplain (7 links)
- Biouml.workbench (plugin) (7 links)
- Text (element type) (7 links)
- Proteins - Transpath (7 links)
- Regulator search (analysis) (7 links)
- Ru.biosoft.plugins.javascript (plugin) (7 links)
- Ensembl (7 links)
- Biouml.plugins.sedml (plugin) (7 links)
- Folder (element type) (7 links)
- Biouml.plugins.bkl (plugin) (6 links)
- Project (6 links)
- Pathways (reference type) (6 links)
- Categories (reference type) (6 links)
- Transcripts (reference type) (6 links)
- General control panel (6 links)
- Probes - Affymetrix ST (6 links)
- GTRD (6 links)
- Profile (element type) (6 links)
- Ru.biosoft.analysis.optimization (plugin) (6 links)
- Simulation (6 links)
- Method (extension point) (6 links)
- Analysis (element type) (6 links)
- Element type (6 links)
- BioUML development history (6 links)
- Repository pane toolbar (6 links)
- Biouml.plugins.enrichment (plugin) (6 links)
- File (element type) (6 links)
- Collection of sequences (element type) (6 links)
- Site model (element type) (5 links)
- BioHub (5 links)
- Matrix library (element type) (5 links)
- Matrices (reference type) (5 links)
- Tree-table (element type) (5 links)
- Html (element type) (5 links)
- Matrix (element type) (5 links)
- Biouml.plugins.chipmunk (plugin) (5 links)
- Image (element type) (5 links)
- Ru.biosoft.workbench (plugin) (5 links)
- BioUML Development Kit (5 links)
- Functional classification (analysis) (5 links)
- Virtual rat (5 links)
- Sequence (element type) (5 links)
- Search tools (5 links)
- Biouml.plugins.fbc (plugin) (4 links)
- Biouml.plugins.endonet (plugin) (4 links)
- Ru.biosoft.galaxy (plugin) (4 links)
- Module (4 links)
- Force directed layout (4 links)
- Ru.biosoft.bsastats (plugin) (4 links)
- Effector search (analysis) (4 links)
- Tabular (file format) (4 links)
- EMBL format (4 links)
- Antimony (4 links)
- Biouml.plugins.transfac (plugin) (4 links)
- BioNetGen (4 links)
- Biouml.plugins.pharm (plugin) (4 links)
- Analysis document (4 links)
- Biouml.plugins.sbml (plugin) (4 links)
- Biouml.plugins.chebi (plugin) (4 links)
- Optimization examples (4 links)
- Using Galaxy in BioUML (4 links)
- Genes - Ensembl (4 links)
- Construct composite modules (analysis) (4 links)
- Fasta format (4 links)
- Enrichment analysis (4 links)
- Annotate table (analysis) (4 links)
- Category:Systems physiology (4 links)
- Com.genexplain.stat (plugin) (4 links)
- Filter table (analysis) (4 links)
- Biouml.plugins.illumina (plugin) (4 links)
- Biouml.plugins.optimization (plugin) (4 links)
- Cross cost grid layout (4 links)
- Site search on gene set (analysis) (4 links)
- Proteins - Reactome (3 links)
- Galaxy data source method (element type) (3 links)
- Proteins - Transpath isogroups (3 links)
- GeneNet (3 links)
- SBML (file format) (3 links)
- Categories - BKL (3 links)
- Probes - Affymetrix HuGene-2-1-st (3 links)
- BioUML installation (3 links)
- Stem-loop-miRNA - miRBase (3 links)
- Optimization problem (3 links)
- Diagram type (3 links)
- Genes - Gene symbol (3 links)
- Unspecified (reference type) (3 links)
- Probes - Illumina (3 links)
- Lucene indexes creation (3 links)
- Graphic notation (3 links)
- Genes - Illumina (3 links)
- SNP (reference type) (3 links)
- Galaxy method (element type) (3 links)
- Proteins - Transpath modified forms (3 links)
- Biouml.plugins.mirbase (plugin) (3 links)
- Categories - ExPASy (3 links)
- Disease - MeSH (3 links)
- Probes - Affymetrix RaGene-2-0-st (3 links)
- Null (3 links)
- BioUML team (3 links)
- Substances - DrugBank (geneXplain) (3 links)
- Substances - CAS (3 links)
- Cell - EndoNet (3 links)
- Com.genexplain.genome (plugin) (3 links)
- Genes - Unigene (3 links)
- Virtual collection (extension point) (3 links)
- Proteins - Ensembl (3 links)
- Gene Ontology (3 links)
- Proteins - Transpath peptides (3 links)
- HTML file (3 links)
- Reference type (extension point) (3 links)
- Enzymes - ExPASy (3 links)
- Drugs - DrugBank (3 links)
- ChIPHorde (analysis) (3 links)
- Substances - Pharmaceutical compounds (3 links)
- Substances - ChEBI (3 links)
- Hormone - EndoNet (3 links)
- Category:Extension points (3 links)
- Grid layout (3 links)
- Proteins - GenBank (3 links)
- R installation (3 links)
- Virtual cell (3 links)
- ChIP-seq peaks - GTRD (3 links)
- Biouml.plugins.genemodels (plugin) (3 links)
- Lucene search (3 links)
- Methylation probes - Illumina (3 links)
- Category:Systems biology (3 links)
- CloudBioLinux (3 links)
- Matrices - TRANSFAC (3 links)
- Genes - Transpath (3 links)
- Proteins - PDB (3 links)
- Graph search (3 links)
- Image file (3 links)
- Text file (3 links)
- Mature-miRNA - miRBase (3 links)
- Genes - BKL (3 links)
- Probes - Affymetrix miRNA-1-0 (3 links)
- ChIPMunk (analysis) (3 links)
- Substances - DrugBank (3 links)
- Category:File formats (3 links)
- Hierarchical layout (3 links)
- BioUML server installation (3 links)
- Affymetrix normalization (analysis) (3 links)
- Proteins - IPI (3 links)
- Transcripts - Ensembl (3 links)
- ChIP experiment - GTRD (3 links)
- Isoforms - GTRD (3 links)
- Transcripts - Illumina (3 links)
- Visual modeling (3 links)
- Ru.biosoft.table (plugin) (3 links)
- Category:Systems medicine (3 links)
- Biouml.plugins.simulation (plugin) (3 links)
- CloudMan (3 links)
- Proteins - Transfac (3 links)
- Rbiouml (3 links)
- Softberry, Inc. (3 links)
- Module (element type) (3 links)
- Structures - PDB (3 links)
- DevelopmentOnTheEdge.com (3 links)
- Join several tables (analysis) (3 links)
- MiRNA - miRBase (3 links)
- Proteins - BKL (3 links)
- Probes - Affymetrix miRNA-2-0 (3 links)
- Substances - KEGG (3 links)
- Proteins - EndoNet (3 links)
- Category:Plugins (3 links)
- Orthogonal layout (3 links)
- Proteins - NCBI (3 links)
- Transcripts - RefSeq (3 links)
- Site models - GTRD (3 links)
- Enzymes - KEGG (3 links)
- Sensitivity Analysis (3 links)
- Pathways - Transpath (3 links)
- Export (extension point) (3 links)
- Matching BioHub (3 links)
- Probes - Affymetrix HG-U133+ PM (3 links)
- Probes - Affymetrix miRNA-3-0 (3 links)
- Databases installation (3 links)
- Proteins - RefSeq (3 links)
- Biouml.plugins.state (plugin) (3 links)
- Workflow (3 links)
- KEGG (reference type) (3 links)
- Category:Systems pharmacology (3 links)
- BioUML wiki Bot (3 links)
- Script (element type) (3 links)
- Biohub (extension point) (3 links)
- Metabolic Control Analysis (3 links)
- Generic file (3 links)
- Biouml.plugins.reactome (plugin) (3 links)
- Probes - Affymetrix HTA-2-0 (3 links)
- Probes - Affymetrix miRNA-4-0 (3 links)
- Creating Galaxy tool (3 links)
- Using JavaScript in BioUML (3 links)
- Biouml.plugins.expasy (plugin) (3 links)
- Genes - Entrez (3 links)
- Galaxy installation (3 links)
- Proteins - UniProt (3 links)
- Categories - Gene ontology (3 links)
- Create profile from gene table (analysis) (3 links)
- Pathways - Reactome (3 links)
- Proteins - Transpath complexes (3 links)
- Category:Document types (3 links)
- Biouml.plugins.research (plugin) (3 links)
- Import (extension point) (3 links)
- Venn diagrams (analysis) (3 links)
- Probes - Affymetrix HuGene-2-0-st (3 links)
- BioUML development roadmap (3 links)
- Probes - Agilent Tox Array (3 links)
- Optimization document (3 links)
- TRRD (3 links)
- Dormand-Prince (3 links)
- Genes - GenBank (3 links)
- Probes - Agilent (3 links)
- Diagram editing history (3 links)
- Categories - GTRD (3 links)
- Short term model of the heart output regulation (3 links)
- Matrices - GTRD (3 links)
- Proteins - GTRD (3 links)
- Filter track by condition (analysis) (2 links)
- Virtual physiological human (2 links)
- IPS motif discovery (analysis) (2 links)
- Category:Host objects (2 links)
- Interval format (2 links)
- Evolution strategy (SRES) (analysis) (2 links)
- Default (perspective) (2 links)
- Fedor Kolpakov (2 links)
- GeneExpress (2 links)
- TreeMap on Functional classification (analysis) (2 links)
- Euler (2 links)
- Layout (extension point) (2 links)
- Agent based modeling (2 links)
- 1-dimensional arterial tree model (2 links)
- GTRD (perspective) (2 links)
- Create weight matrix model (analysis) (2 links)
- Genome Browser iframe (2 links)
- Category:Virtual biology projects (2 links)
- Join tracks (analysis) (2 links)
- GLBSOLVE (analysis) (2 links)
- Perspective (extension point) (2 links)
- TRRD viewer (2 links)
- Download (2 links)
- Construct composite modules on tracks (analysis) (2 links)
- Defines.js (2 links)
- Site distribution (analysis) (2 links)
- to user communication (2 links)
- Add expression values (analysis) (2 links)
- Illumina normalization (analysis) (2 links)
- Convert site models to proteins (analysis) (2 links)
- GenBank format (2 links)
- Tagir Valeev (2 links)
- Parameter identifiability (optimization) (analysis) (2 links)
- Category:Workflows (2 links)
- Preprocess raw reads (analysis) (2 links)
- Script viewpart (2 links)
- Gene Ontology database (2 links)
- Table (host object) (2 links)
- Biouml.plugins.ccsignature (plugin) (2 links)
- Classification hub (2 links)
- Acknowledgements (2 links)
- Biouml.plugins.machinelearning (plugin) (2 links)
- Convert table via homology (analysis) (2 links)
- Imex (2 links)
- Export element (analysis) (2 links)
- Select table columns (analysis) (2 links)
- Change profile cutoffs (analysis) (2 links)
- Quasi-Steady-State Analysis (2 links)
- Template:Element types (2 links)
- Parameter identifiability (table) (analysis) (2 links)
- BIOSOFT.RU (2 links)
- Types (extension point) (2 links)
- Track coverage (analysis) (2 links)
- Adaptive simulated annealing (analysis) (2 links)
- Plugin development (2 links)
- Flux balance analysis (2 links)
- Danon et al. Covid-19 transmission in England (2 links)
- JVODE (2 links)
- Ensembl installation (2 links)
- Join table (analysis) (2 links)
- Convert table to track (analysis) (2 links)
- Gene set to track (analysis) (2 links)
- Merge track statistics (analysis) (2 links)
- Category:GeneXplain analyses (2 links)
- Track statistics (analysis) (2 links)
- Biohub (host object) (2 links)
- Particle swarm optimization (analysis) (2 links)
- Biouml.plugins.metabolics (plugin) (2 links)
- Element action (extension point) (2 links)
- PSD pharmaceutical compounds analysis (2 links)
- ChIPMunk (perspective) (2 links)
- Metabolic control analysis example (2 links)
- Ru.biosoft.proteome (plugin) (2 links)
- Gene overlap statistics (analysis) (2 links)
- Repository actions provider (extension point) (2 links)
- BioUML workbench installation (2 links)
- Agilent normalization (analysis) (2 links)
- GO installation (2 links)
- Copy data element (analysis) (2 links)
- Biouml.plugins.das (plugin) (2 links)
- BED format (2 links)
- Biouml.plugins.bionetgen (plugin) (2 links)
- Server administrator (2 links)
- General Feature Format (2 links)
- Method description HTML file (2 links)
- Category:Virtual cell (2 links)
- Transcript set to track (analysis) (2 links)
- Softberry (perspective) (2 links)
- Biomodels (2 links)
- Quadratic Hill-climbing (analysis) (2 links)
- Template (extension point) (2 links)
- Cluster analysis by K-means (analysis) (2 links)
- MGL (2 links)
- Up and Down Identification (analysis) (2 links)
- Pharmaceutical Compounds analysis (2 links)
- Quasi-steady-state analysis example (2 links)
- Application log (viewpart) (2 links)
- Tree-table document (2 links)
- Analysis method development (2 links)
- Copy folder (analysis) (2 links)
- Building Flux Balance DataTable (analysis) (2 links)
- Biouml.plugins.chemoinformatics (plugin) (2 links)
- Biouml.plugins.perfectosape (plugin) (2 links)
- Virtual liver (2 links)
- Category:Virtual human (2 links)
- Category:GeneXplain workflows (2 links)
- Data (host object) (2 links)
- Cellular genetic algorithm (analysis) (2 links)
- Reactome (2 links)
- Upload from FTP (analysis) (2 links)
- BioNetGen language format (2 links)
- Bowtie (analysis) (2 links)
- DiChIPHorde (analysis) (2 links)
- Sensitivity analysis example (2 links)
- Com.genexplain.mirna (plugin) (2 links)
- RADAU V (2 links)
- Collaborative diagram editing (2 links)
- Flux Balance Constraint (analysis) (2 links)
- Long-term model of the CVS/Renal system (2 links)
- Biouml.plugins.kegg (plugin) (2 links)
- Rebuild search indexes (analysis) (2 links)
- Systems biology - model simulation (2 links)
- Virtual patient (2 links)
- Category:Virtual patient (2 links)
- SAM or BAM alignment file (2 links)
- VCF format (2 links)
- Run MACS 1.3.7 on ChiP-Seq (analysis) (2 links)
- Ru.biosoft.templates (plugin) (2 links)
- DiChIPMunk (analysis) (2 links)
- Com.genexplain.tfbs (plugin) (2 links)
- Using R in BioUML (2 links)
- Functional classification by diagrams (analysis) (2 links)
- Create folder (analysis) (2 links)
- Recon transformer (analysis) (2 links)
- Perfectosape (analysis) (2 links)
- Create profile from site model table (analysis) (2 links)
